rbbp5 (rbbp5,LOC106565113)


Basic Information

Item Value
gene id rbbp5
gene name rbbp5,LOC106565113
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17537973 ~ 17549957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682499.1
TTCAGGCGCTCCGGGCAGGCTTTGTTTTGGGGTCCTCGGGCTTGGCGCTTTCCGCTCCGGGTTTTTCTGTGGTTTATATTGGGattattttgggtttatttgctgtatttttaCCGCAGTTTTGCTGCTGAACTCTCTGGATTAGGGttgttttataaataagagCAGAGATGAATCTGGAGCTGCTCGagtcgTTCGGGCAGAACTATCCAGAGGAGGCAGATGGCACTCTGGACTGCATCAGCATGGCTCTGACCTGCACCTTTAACCGCTGGGGGACGCTGCTGGCTGTCGGCTGTAACGACGGACGCATCGTCATCTGGGACTTCCTCACGCGAGGCATCGCCAAAATCATCAGCGCACACATTCACCCCGTCTGCTCGCTCTGTTGGAGTCGAGACGGACACAAGCTGGTCAGCGCCTCCACAGATAACATCGTGTCTCAGTGGGACGTTTTGACCGGAGACTGCGACCAGAGATTCCGGTTCCCCTCTCCCATCCTTAAACTGCAGTACCACCCCAGAGACGCAGATAAAGTCCTGGTGTGTCCGATGAAATCAGCACCAGTGCTGTTAACACTATCAGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCGGACCTAAACGTGGTGGCGGCGTTTGACCGACGGGGGGAGTACATCTACACAGGGAACGCCAAAGGAAAGATTCTGGTGCTGAACACAGACACGCAGGATTTGGTGGCGTCGTTTCGGGTAACAACAGGAACCAGCAACTCCACCGCCATCAAATCCATCGAGTTTGCACGAAAgggcagCTGTTTCCTCATCAACACGGCGGATCGCATCATCAGAGTTTACGACGGCAGAGAGATCCTCACCTGCGGTCGAGACGGTGAGCCAGAGCCCATGCAGAAGCTCCAGGACCTGGTTAACAGGACCCCGTGGAAGCGCTGCTGTTTCTCTGGAGATGGAGAGTATATAGTGGCAGGTTCTGCGCGGCAGCATGCTCTCTATATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATTCTTCACGGAACGAGAGGAGAACTGCTGCTGGACGTGGCGTGGCATCCAGTGAGGCCCATCATCGCCTCAATCTCCAGTGGAGTCGTTTCAATTTGGGCCCAGAACCAAGTGGAGAACTGGAGCGCCTTTGCACCGGACTTTAAAGAGCTGGACGAGAACGTGGAGTACGAGGAGAGAGAGTCGGAATTCGACATAGAAGACGAGGACAAGAGCGAACCTGAGCAGACAGGGGCAAACGCCGCtgaggacgaggaggtggaTGTGACCTCAGTTGACCCCATACCAGCATTCTGCAGCAGCTTCAGTGATGAAGAACTGGAGGACCACAAGGCGCTGCTCTACCTGCCCATCGCCCCTGAAGTCGAGGATCCAGAGGAGAACCCGTTTGGTCCTCCGCCGGACGGTGGGGGTCAGAACCCGTCTGAGGATGGCTCCGCCCACACAGGCGGGGACAAGAAACAGAGACAGCCGTCAGCTGATGGAGCGCCGCCCAAGAAAAAAGCTCGAACAACCACCATCGAGCTGCAGGGCGTCCCCAGTGACGAAGTGCACCCTCTGCTGGGCGTGAAGGGCGACAGCAAGTCGAAGAAGAAGACCGCCGGCCGTCCGAAGGGAACGAAAGGTAAAGAGAAAGATTCTCCGTTTAGGCCGAAACTGTtcggagacagagagagggagagagacagaggggtgGCTGTGGACGGGGCAGTGAAGGGCAGGCCGGAGGCTGTGCCAGTGCCAGGTAACCTGGTGACCCCGGCGTTCAAACCTCACGACGTTCAGGGTCTGGACTGAGCAGCAAACCCACAGCGCCCCCCAGAGTGCGGAGGACTAATGGACTCAATAAAGACTCGATAAAGTGCTGATTCCTAAAGACGCTCCAGCAGCAAAACAGGACTGTCTGGATTCAGCTCTTTCTGCGCCCAGATCAGCCGAAAGAAAATCAGATCCATTCAAAAGCACGACAGCCACAGACTTTCTCGctggcagagagagaggaagagactgtggagaagaggagagaggactcttattttttattattttattttttattttattatgtttttctcCTGTAGAGTAGGCAGCActgtctcctcctcctccagcagcagctctcTCACTGTTGTGTAGTCTGTAGGTGAGTCCTGTCAGATTTTAATGACATCATGACTTTCACGTCTTTTTTCATAATTATTAAAccaattttttgtgttttttgatgtAATATTTGTGCTGAATTTTTGCTCCTTTGGTTACTCCAGTTTTTAGACTGTATGGACTTCGCTCACCTGGTCAAACCGTAAAATAAACGATCCCACACTCGTCTAAAA
>XM_022682500.1
GTTCAGGCGCTCCGGGCAGGCTTTGTTTTGGGGTCCTCGGGCTTGGCGCTTTCCGCTCCGGGTTTTTCTGTGGTTTATATTGGGattattttgggtttatttgctgtatttttaCCGCAGTTTTGCTGCTGAACTCTCTGGATTAGGGttgttttataaataagagCAGAGATGAATCTGGAGCTGCTCGagtcgTTCGGGCAGAACTATCCAGAGGAGGCAGATGGCACTCTGGACTGCATCAGCATGGCTCTGACCTGCACCTTTAACCGCTGGGGGACGCTGCTGGCTGTCGGCTGTAACGACGGACGCATCGTCATCTGGGACTTCCTCACGCGAGGCATCGCCAAAATCATCAGCGCACACATTCACCCCGTCTGCTCGCTCTGTTGGAGTCGAGACGGACACAAGCTGGTCAGCGCCTCCACAGATAACATCGTGTCTCAGTGGGACGTTTTGACCGGAGACTGCGACCAGAGATTCCGGTTCCCCTCTCCCATCCTTAAACTGCAGTACCACCCCAGAGACGCAGATAAAGTCCTGGTGTGTCCGATGAAATCAGCACCAGTGCTGTTAACACTATCAGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCGGACCTAAACGTGGTGGCGGCGTTTGACCGACGGGGGGAGTACATCTACACAGGGAACGCCAAAGGAAAGATTCTGGTGCTGAACACAGACACGCAGGATTTGGTGGCGTCGTTTCGGGTAACAACAGGAACCAGCAACTCCACCGCCATCAAATCCATCGAGTTTGCACGAAAgggcagCTGTTTCCTCATCAACACGGCGGATCGCATCATCAGAGTTTACGACGGCAGAGAGATCCTCACCTGCGGTCGAGACGGTGAGCCAGAGCCCATGCAGAAGCTCCAGGACCTGGTTAACAGGACCCCGTGGAAGCGCTGCTGTTTCTCTGGAGATGGAGAGTATATAGTGGCAGGTTCTGCGCGGCAGCATGCTCTCTATATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATTCTTCACGGAACGAGAGGAGAACTGCTGCTGGACGTGGCGTGGCATCCAGTGAGGCCCATCATCGCCTCAATCTCCAGTGGAGTCGTTTCAATTTGGGCCCAGAACCAAGTGGAGAACTGGAGCGCCTTTGCACCGGACTTTAAAGAGCTGGACGAGAACGTGGAGTACGAGGAGAGAGAGTCGGAATTCGACATAGAAGACGAGGACAAGAGCGAACCTGAGCAGACAGGGGCAAACGCCGCtgaggacgaggaggtggaTGTGACCTCAGTTGACCCCATACCAGCATTCTGCAGCAGTGATGAAGAACTGGAGGACCACAAGGCGCTGCTCTACCTGCCCATCGCCCCTGAAGTCGAGGATCCAGAGGAGAACCCGTTTGGTCCTCCGCCGGACGGTGGGGGTCAGAACCCGTCTGAGGATGGCTCCGCCCACACAGGCGGGGACAAGAAACAGAGACAGCCGTCAGCTGATGGAGCGCCGCCCAAGAAAAAAGCTCGAACAACCACCATCGAGCTGCAGGGCGTCCCCAGTGACGAAGTGCACCCTCTGCTGGGCGTGAAGGGCGACAGCAAGTCGAAGAAGAAGACCGCCGGCCGTCCGAAGGGAACGAAAGGTAAAGAGAAAGATTCTCCGTTTAGGCCGAAACTGTtcggagacagagagagggagagagacagaggggtgGCTGTGGACGGGGCAGTGAAGGGCAGGCCGGAGGCTGTGCCAGTGCCAGGTAACCTGGTGACCCCGGCGTTCAAACCTCACGACGTTCAGGGTCTGGACTGAGCAGCAAACCCACAGCGCCCCCCAGAGTGCGGAGGACTAATGGACTCAATAAAGACTCGATAAAGTGCTGATTCCTAAAGACGCTCCAGCAGCAAAACAGGACTGTCTGGATTCAGCTCTTTCTGCGCCCAGATCAGCCGAAAGAAAATCAGATCCATTCAAAAGCACGACAGCCACAGACTTTCTCGctggcagagagagaggaagagactgtggagaagaggagagaggactcttattttttattattttattttttattttattatgtttttctcCTGTAGAGTAGGCAGCActgtctcctcctcctccagcagcagctctcTCACTGTTGTGTAGTCTGTAGGTGAGTCCTGTCAGATTTTAATGACATCATGACTTTCACGTCTTTTTTCATAATTATTAAAccaattttttgtgttttttgatgtAATATTTGTGCTGAATTTTTGCTCCTTTGGTTACTCCAGTTTTTAGACTGTATGGACTTCGCTCACCTGGTCAAACCGTAAAATAAACGATCCCACACTCGTCTAAAA
>XM_022682501.1
TCAGGCGCTCCGGGCAGGCTTTGTTTTGGGGTCCTCGGGCTTGGCGCTTTCCGCTCCGGGTTTTTCTGTGGTTTATATTGGGattattttgggtttatttgctgtatttttaCCGCAGTTTTGCTGCTGAACTCTCTGGATTAGGGttgttttataaataagagCAGAGATGAATCTGGAGCTGCTCGagtcgTTCGGGCAGAACTATCCAGAGGAGGCAGATGGCACTCTGGACTGCATCAGCATGGCTCTGACCTGCACCTTTAACCGCTGGGGGACGCTGCTGGCTGTCGGCTGTAACGACGGACGCATCGTCATCTGGGACTTCCTCACGCGAGGCATCGCCAAAATCATCAGCGCACACATTCACCCCGTCTGCTCGCTCTGTTGGAGTCGAGACGGACACAAGCTGGTCAGCGCCTCCACAGATAACATCGTGTCTCAGTGGGACGTTTTGACCGGAGACTGCGACCAGAGATTCCGGTTCCCCTCTCCCATCCTTAAACTGCAGTACCACCCCAGAGACGCAGATAAAGTCCTGGTGTGTCCGATGAAATCAGCACCAGTGCTGTTAACACTATCAGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCGGACCTAAACGTGGTGGCGGCGTTTGACCGACGGGGGGAGTACATCTACACAGGGAACGCCAAAGGAAAGATTCTGGTGCTGAACACAGACACGCAGGATTTGGTGGCGTCGTTTCGGGTAACAACAGGAACCAGCAACTCCACCGCCATCAAATCCATCGAGTTTGCACGAAAgggcagCTGTTTCCTCATCAACACGGCGGATCGCATCATCAGAGTTTACGACGGCAGAGAGATCCTCACCTGCGGTCGAGACGGTGAGCCAGAGCCCATGCAGAAGCTCCAGGACCTGGTTAACAGGACCCCGTGGAAGCGCTGCTGTTTCTCTGGAGATGGAGAGTATATAGTGGCAGGTTCTGCGCGGCAGCATGCTCTCTATATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATTCTTCACGGAACGAGAGGAGAACTGCTGCTGGACGTGGCGTGGCATCCAGTGAGGCCCATCATCGCCTCAATCTCCAGTGGAGTCGTTTCAATTTGGGCCCAGAACCAAGTGGAGAACTGGAGCGCCTTTGCACCGGACTTTAAAGAGCTGGACGAGAACGTGGAGTACGAGGAGAGAGAGTCGGAATTCGACATAGAAGACGAGGACAAGAGCGAACCTGAGCAGACAGGGGCAAACGCCGCtgaggacgaggaggtggaTGTGACCTCAGTTGACCCCATACCAGCATTCTGCAGCAGCTTCAGTGATGAAGAACTGGAGGACCACAAGGCGCTGCTCTACCTGCCCATCGCCCCTGAAGTCGAGGATCCAGAGGAGAACCCGTTTGGTCCTCCGCCGGACGGTGGGGGTCAGAACCCGTCTGAGGATGGCTCCGCCCACACAGGCGGGGACAAGAAACAGAGACAGCCGTCAGCTGATGGAGCGCCGCCCAAGAAAAAAGCTCGAACAACCACCATCGAGCTGCAGGGCGTCCCCAGTGACGAAGTGCACCCTCTGCTGGGCGTGAAGGGCGACAGCAAGTCGAAGAAGAAGACCGCCGGCCGTCCGAAGGGAACGAAAGGTAACCTGGTGACCCCGGCGTTCAAACCTCACGACGTTCAGGGTCTGGACTGAGCAGCAAACCCACAGCGCCCCCCAGAGTGCGGAGGACTAATGGACTCAATAAAGACTCGATAAAGTGCTGATTCCTAAAGACGCTCCAGCAGCAAAACAGGACTGTCTGGATTCAGCTCTTTCTGCGCCCAGATCAGCCGAAAGAAAATCAGATCCATTCAAAAGCACGACAGCCACAGACTTTCTCGctggcagagagagaggaagagactgtggagaagaggagagaggactcttattttttattattttattttttattttattatgtttttctcCTGTAGAGTAGGCAGCActgtctcctcctcctccagcagcagctctcTCACTGTTGTGTAGTCTGTAGGTGAGTCCTGTCAGATTTTAATGACATCATGACTTTCACGTCTTTTTTCATAATTATTAAAccaattttttgtgttttttgatgtAATATTTGTGCTGAATTTTTGCTCCTTTGGTTACTCCAGTTTTTAGACTGTATGGACTTCGCTCACCTGGTCAAACCGTAAAATAAACGATCCCACACTCGTCTAAAA
>XM_022682502.1
TTCAGGCGCTCCGGGCAGGCTTTGTTTTGGGGTCCTCGGGCTTGGCGCTTTCCGCTCCGGGTTTTTCTGTGGTTTATATTGGGattattttgggtttatttgctgtatttttaCCGCAGTTTTGCTGCTGAACTCTCTGGATTAGGGttgttttataaataagagCAGAGATGAATCTGGAGCTGCTCGagtcgTTCGGGCAGAACTATCCAGAGGAGGCAGATGGCACTCTGGACTGCATCAGCATGGCTCTGACCTGCACCTTTAACCGCTGGGGGACGCTGCTGGCTGTCGGCTGTAACGACGGACGCATCGTCATCTGGGACTTCCTCACGCGAGGCATCGCCAAAATCATCAGCGCACACATTCACCCCGTCTGCTCGCTCTGTTGGAGTCGAGACGGACACAAGCTGGTCAGCGCCTCCACAGATAACATCGTGTCTCAGTGGGACGTTTTGACCGGAGACTGCGACCAGAGATTCCGGTTCCCCTCTCCCATCCTTAAACTGCAGTACCACCCCAGAGACGCAGATAAAGTCCTGGTGTGTCCGATGAAATCAGCACCAGTGCTGTTAACACTATCAGACTCCAAACACGTGGTTCTGCCGGTGGACGACGACTCGGACCTAAACGTGGTGGCGGCGTTTGACCGACGGGGGGAGTACATCTACACAGGGAACGCCAAAGGAAAGATTCTGGTGCTGAACACAGACACGCAGGATTTGGTGGCGTCGTTTCGGGTAACAACAGGAACCAGCAACTCCACCGCCATCAAATCCATCGAGTTTGCACGAAAgggcagCTGTTTCCTCATCAACACGGCGGATCGCATCATCAGAGTTTACGACGGCAGAGAGATCCTCACCTGCGGTCGAGACGGTGAGCCAGAGCCCATGCAGAAGCTCCAGGACCTGGTTAACAGGACCCCGTGGAAGCGCTGCTGTTTCTCTGGAGATGGAGAGTATATAGTGGCAGGTTCTGCGCGGCAGCATGCTCTCTATATCTGGGAGAAGAGCATCGGGAACCTGGTGAAGATTCTTCACGGAACGAGAGGAGAACTGCTGCTGGACGTGGCGTGGCATCCAGTGAGGCCCATCATCGCCTCAATCTCCAGTGGAGTCGTTTCAATTTGGGCCCAGAACCAAGTGGAGAACTGGAGCGCCTTTGCACCGGACTTTAAAGAGCTGGACGAGAACGTGGAGTACGAGGAGAGAGAGTCGGAATTCGACATAGAAGACGAGGACAAGAGCGAACCTGAGCAGACAGGGGCAAACGCCGCtgaggacgaggaggtggaTGTGACCTCAGTTGACCCCATACCAGCATTCTGCAGCAGTGATGAAGAACTGGAGGACCACAAGGCGCTGCTCTACCTGCCCATCGCCCCTGAAGTCGAGGATCCAGAGGAGAACCCGTTTGGTCCTCCGCCGGACGGTGGGGGTCAGAACCCGTCTGAGGATGGCTCCGCCCACACAGGCGGGGACAAGAAACAGAGACAGCCGTCAGCTGATGGAGCGCCGCCCAAGAAAAAAGCTCGAACAACCACCATCGAGCTGCAGGGCGTCCCCAGTGACGAAGTGCACCCTCTGCTGGGCGTGAAGGGCGACAGCAAGTCGAAGAAGAAGACCGCCGGCCGTCCGAAGGGAACGAAAGGTAACCTGGTGACCCCGGCGTTCAAACCTCACGACGTTCAGGGTCTGGACTGAGCAGCAAACCCACAGCGCCCCCCAGAGTGCGGAGGACTAATGGACTCAATAAAGACTCGATAAAGTGCTGATTCCTAAAGACGCTCCAGCAGCAAAACAGGACTGTCTGGATTCAGCTCTTTCTGCGCCCAGATCAGCCGAAAGAAAATCAGATCCATTCAAAAGCACGACAGCCACAGACTTTCTCGctggcagagagagaggaagagactgtggagaagaggagagaggactcttattttttattattttattttttattttattatgtttttctcCTGTAGAGTAGGCAGCActgtctcctcctcctccagcagcagctctcTCACTGTTGTGTAGTCTGTAGGTGAGTCCTGTCAGATTTTAATGACATCATGACTTTCACGTCTTTTTTCATAATTATTAAAccaattttttgtgttttttgatgtAATATTTGTGCTGAATTTTTGCTCCTTTGGTTACTCCAGTTTTTAGACTGTATGGACTTCGCTCACCTGGTCAAACCGTAAAATAAACGATCCCACACTCGTCTAAAA

Function

symbol description
rbbp5 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

NR:

description
PREDICTED: retinoblastoma-binding protein 5 isoform X1

GO: NA

KEGG:

id description
K14961 RBBP5, SWD1, CPS50; COMPASS component SWD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682499.1 True 2371 mRNA 0.53 14 17537974 17549957
XM_022682500.1 False 2366 mRNA 0.53 14 17537973 17549957
XM_022682501.1 False 2250 mRNA 0.53 14 17537975 17549957
XM_022682502.1 False 2245 mRNA 0.53 14 17537974 17549957

Neighbor

gene id symbol gene type direction distance location
dram2 LOC108413005 coding upstream 72886 17458210 ~ 17465087 (+)
LOC103036105 cacna1sa,LOC107667627 coding upstream 125902 17369537 ~ 17412071 (+)
LOC103036408 LOC103036408 coding upstream 171244 17362425 ~ 17366729 (+)
lamb3 NA coding upstream 272150 17241432 ~ 17265823 (+)
LOC103038691 NA coding upstream 314695 17216776 ~ 17223278 (+)
LOC103023632 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 coding downstream 34195 17584152 ~ 17586613 (+)
LOC103033874 arl8a,LOC107722853,LOC107671521,LOC107569762,LOC107750681 coding downstream 78883 17628840 ~ 17640167 (+)
LOC103033562 LOC108412444 coding downstream 188530 17738487 ~ 17749318 (+)
srsf3 srsf3,srsf3b,LOC108413700,LOC107569752,LOC107690536 coding downstream 205987 17755944 ~ 17766863 (+)
LOC103033239 tmcc2,LOC107569750,LOC107690538,LOC107656904 coding downstream 247644 17797601 ~ 17801504 (+)
G190589 NA non-coding upstream 8097 17529469 ~ 17529876 (+)
G190581 NA non-coding upstream 31816 17493591 ~ 17506157 (+)
G190555 NA non-coding upstream 64494 17468901 ~ 17473479 (+)
G190554 NA non-coding upstream 118717 17405044 ~ 17419256 (+)
G190558 NA non-coding upstream 119197 17414275 ~ 17418776 (+)
G190593 NA non-coding downstream 1961 17551918 ~ 17565901 (+)
G190603 NA non-coding downstream 67433 17617390 ~ 17618763 (+)
G190572 NA non-coding downstream 69967 17619924 ~ 17652090 (+)
G190568 NA non-coding downstream 95887 17645844 ~ 17653986 (+)
G190600 NA non-coding downstream 114276 17664233 ~ 17701831 (+)
LOC103024479 LOC108413015 other upstream 24664 17508390 ~ 17513309 (+)
G190550 NA other upstream 44791 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 91232 17434362 ~ 17446741 (+)
G190484 irf6,LOC106565674 other upstream 352845 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 414299 17119945 ~ 17123674 (+)
cdkn1a NA other downstream 138560 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 472295 18022252 ~ 18041509 (+)
tmem43 NA other downstream 920640 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 1002897 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 1148640 18698597 ~ 18722747 (+)

Expression


Co-expression Network