LOC103036408 (LOC103036408)


Basic Information

Item Value
gene id LOC103036408
gene name LOC103036408
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17362425 ~ 17366729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256757.3
AGCACTCTGACATCACTTTAGGATCTGATGCTCTGGAACTCTCCACTGACTCCAGCAGCTTCTCCAACACCTGAGCAGCCCTGTGTCTAACAGAGAGGAGATGATGAAAgcgtctgattggctgatggcactgctgctgctacaaaGGAGGAGCTCACCTACAAAGGTGTGAAGAGACAGTGAGGATGACTATAAGAAGATGATGAGGACGATGAAGCTGGGGCTCTGGTGCGCCCTCTGCTGGGCTTAACTATGAGTTAattgagtgttttttatttattttttcaatgcTTGTTGTGACAGTAGGTTCTGGTTCTGTGGTTCTGGTACTGTAGGTGTATTAGGAGTGTTCAGGTGGGAATGGACTGATGTAAAACCCACCATGAGCTCCACCTTCTCCCACCCATACTGCCACCTCAGCCAGAGCAGCCTGCACTGCGCCATGTCTCCGCCTGGTGGCCACCCTGATAACCGCCTCCACGCCCAGCTTCGCTCCCTCCCCCTGCTGCTGTACCCAGGAAGGGTCCAGGCCGGACTCTACAACGGCCCCTACCTGCCCTACCTGGGGCCCCTGTACGAGTGTCCCTTCGAACCCGCCTTCATCCAGAAGCGAAACGAGCGCGAGCGGCAGCGGGTGAAGTGCGTCAACCAGGGTTATGCCAAGCTCCGAGACCACCTGCCGGGCGGGACCGCCGACAAGCGCATGAGCAAAGTAGAGACACTGAGGGCCGCCATTCGCTACATCAAGCACCTGCAGAGGCTGGTGGAGGAGCGGGAGGAGGGCCGGGGTCACGACAGGTCAGACATCGCAGAAGGTAGCGACGGAGAAGCTCCACCCACAATCTCTTCGCTTGAGCTCCAAAGCAAGGCCACTGGGAGCTAGATGTGTGAACTGGGCTTGGATTCGGCCCTCACTGAACTTTAGtccaaatatttacaataaacttttaataaacccCCAAGCACACACCTGAGCTGTACAGGTGTTCACCAGTACATGTGAATTTCAATTGTTACAGCGAGGTAAAACACACATGGGCAATGTAACACCTGTACTACATTGGTATACACTTGAACCTAGTTGAACAACACACAAAGAAGAAGCTATCAATAACAATAATGTGGAGAAGCTCCACCTACAAGCCCTTTAAGGCCACTGGAAGCTATATATGTAATCTGGGCTTGGATTTGGCCC

Function

NR:

description
achaete-scute homolog 5-like

GO: NA

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256757.3 True 1195 mRNA 0.53 2 17362425 17366729

Neighbor

gene id symbol gene type direction distance location
lamb3 NA coding upstream 96602 17241432 ~ 17265823 (+)
LOC103038691 NA coding upstream 139147 17216776 ~ 17223278 (+)
LOC103032680 NA coding upstream 255325 17104113 ~ 17107100 (+)
c22h12orf10 LOC107570120 coding upstream 260810 17096066 ~ 17101615 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding upstream 308361 17028248 ~ 17054064 (+)
LOC103036105 cacna1sa,LOC107667627 coding downstream 2808 17369537 ~ 17412071 (+)
dram2 LOC108413005 coding downstream 91481 17458210 ~ 17465087 (+)
rbbp5 rbbp5,LOC106565113 coding downstream 171244 17537973 ~ 17549957 (+)
LOC103023632 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 coding downstream 217423 17584152 ~ 17586613 (+)
LOC103033874 arl8a,LOC107722853,LOC107671521,LOC107569762,LOC107750681 coding downstream 262111 17628840 ~ 17640167 (+)
G190539 NA non-coding upstream 18853 17341090 ~ 17343572 (+)
G190538 NA non-coding upstream 35951 17323431 ~ 17326474 (+)
G190513 NA non-coding upstream 41551 17236569 ~ 17320874 (+)
G190524 NA non-coding upstream 57735 17258004 ~ 17304690 (+)
G190533 NA non-coding upstream 62770 17298821 ~ 17299655 (+)
G190554 NA non-coding downstream 38315 17405044 ~ 17419256 (+)
G190556 NA non-coding downstream 46407 17413136 ~ 17414137 (+)
G190558 NA non-coding downstream 47546 17414275 ~ 17418776 (+)
G190559 NA non-coding downstream 48053 17414782 ~ 17416936 (+)
G190555 NA non-coding downstream 102172 17468901 ~ 17473479 (+)
G190484 irf6,LOC106565674 other upstream 177297 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 238751 17119945 ~ 17123674 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other upstream 484587 16830909 ~ 16877838 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 1582589 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 1605244 15710930 ~ 15757181 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 67633 17434362 ~ 17446741 (+)
G190550 NA other downstream 117091 17483820 ~ 17493182 (+)
LOC103024479 LOC108413015 other downstream 141661 17508390 ~ 17513309 (+)
cdkn1a NA other downstream 321788 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 655523 18022252 ~ 18041509 (+)

Expression


Co-expression Network