G190533


Basic Information

Item Value
gene id G190533
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17298821 ~ 17299655 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258334
cagcagtttagtttagccccacccattcagatctacagcagtttagctccacccttttacatctatagcagtttagctccacccactcagACGTACACCATTTTTTTCAGTTGAAAAACTTACCTTTTTATCCATCAAGTTCTTCAACATTCTTCACACAACAGGAACCTGGAACCAGAGATAGaccaatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagtgataTATTCTGAAAGGTCAGGAAAGTGCAACCTGGCACTGTGGGAGGCTCTGGGATGAAACAGGTTaacgttgtgtgtgtgtgtgttgtgtgagtgtgtgtgtatgtttgtgtgtgtcacaTATAAAAGAAATTCATCACTGATAACAAATCACTATGGCAACAGGTCAACATGAGGTTTAATCAACATATTAGCGTCAGTGGAGACGGGTCACGGTGACCTTCATTAGACCTTCCTCATCTTCACACACTGACCTTAAAATacggataataataataataataataataataataataataataatttcagctCACCTTTTCATTAACTGCTGTGGGTTTGCAGGAGTCATCAACACTCAAACACACCCTTAACACACTCTCAGATATactcactctacacactcttaacacactcaaacacactcttAACACACTCTCAGATATactcactctacacactcttaacacacttaaacacactctTGAAATGTGACATAAGATACCAAAGTCCAtacacacatctctctctctcatactcaaACACAGCTGTGTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258334 True 783 lncRNA 0.39 2 17298821 17299655

Neighbor

gene id symbol gene type direction distance location
lamb3 NA coding upstream 32998 17241432 ~ 17265823 (+)
LOC103038691 NA coding upstream 75543 17216776 ~ 17223278 (+)
LOC103032680 NA coding upstream 191721 17104113 ~ 17107100 (+)
c22h12orf10 LOC107570120 coding upstream 197206 17096066 ~ 17101615 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding upstream 244757 17028248 ~ 17054064 (+)
LOC103036408 LOC103036408 coding downstream 62770 17362425 ~ 17366729 (+)
LOC103036105 cacna1sa,LOC107667627 coding downstream 69882 17369537 ~ 17412071 (+)
dram2 LOC108413005 coding downstream 158555 17458210 ~ 17465087 (+)
rbbp5 rbbp5,LOC106565113 coding downstream 238318 17537973 ~ 17549957 (+)
LOC103023632 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 coding downstream 284497 17584152 ~ 17586613 (+)
G190516 NA non-coding upstream 65497 17232974 ~ 17233324 (+)
G190485 NA non-coding upstream 71269 17225688 ~ 17227552 (+)
G190486 NA non-coding upstream 74162 17211222 ~ 17224659 (+)
G190514 NA non-coding upstream 92985 17205352 ~ 17205836 (+)
G190512 irf6 non-coding upstream 105100 17188661 ~ 17193721 (+)
G190538 NA non-coding downstream 23776 17323431 ~ 17326474 (+)
G190539 NA non-coding downstream 41435 17341090 ~ 17343572 (+)
G190554 NA non-coding downstream 105389 17405044 ~ 17419256 (+)
G190556 NA non-coding downstream 113481 17413136 ~ 17414137 (+)
G190558 NA non-coding downstream 114620 17414275 ~ 17418776 (+)
G190484 irf6,LOC106565674 other upstream 113693 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 175147 17119945 ~ 17123674 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other upstream 420983 16830909 ~ 16877838 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 1518985 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 1541640 15710930 ~ 15757181 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 134707 17434362 ~ 17446741 (+)
G190550 NA other downstream 184165 17483820 ~ 17493182 (+)
LOC103024479 LOC108413015 other downstream 208735 17508390 ~ 17513309 (+)
cdkn1a NA other downstream 388862 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 722597 18022252 ~ 18041509 (+)

Expression


Co-expression Network