G190516


Basic Information

Item Value
gene id G190516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17232974 ~ 17233324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258317
GTGCTCATGGCGAGTAAACCTGTTTACCAGCAGACGCTCGTCCTCCGCCAGCTCCCATAATTCAACAGCACCTGAGTCTGAGGCGAGGATGATGGCTCTGTTGGTGAGCCACTCAGCGTGGGTAACTCCCGCCTCTGTCTGAACCCCCGCCTTACAGTAACCCTCGTTAGGAGCGAGTTTAGCATCACTGAACACCCAGAGAGAACCGAGCCAACACCGACCCGTCAGACCCGACGCCCCCAACAGCAGAGTCCCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258317 True 256 lncRNA 0.58 2 17232974 17233324

Neighbor

gene id symbol gene type direction distance location
LOC103038691 NA coding upstream 9696 17216776 ~ 17223278 (+)
LOC103032680 NA coding upstream 125874 17104113 ~ 17107100 (+)
c22h12orf10 LOC107570120 coding upstream 131359 17096066 ~ 17101615 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding upstream 178910 17028248 ~ 17054064 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding upstream 622598 16604852 ~ 16610376 (+)
lamb3 NA coding downstream 8108 17241432 ~ 17265823 (+)
LOC103036408 LOC103036408 coding downstream 129101 17362425 ~ 17366729 (+)
LOC103036105 cacna1sa,LOC107667627 coding downstream 136213 17369537 ~ 17412071 (+)
dram2 LOC108413005 coding downstream 224886 17458210 ~ 17465087 (+)
rbbp5 rbbp5,LOC106565113 coding downstream 304649 17537973 ~ 17549957 (+)
G190485 NA non-coding upstream 5422 17225688 ~ 17227552 (+)
G190486 NA non-coding upstream 8315 17211222 ~ 17224659 (+)
G190514 NA non-coding upstream 27138 17205352 ~ 17205836 (+)
G190512 irf6 non-coding upstream 39253 17188661 ~ 17193721 (+)
G190487 NA non-coding upstream 69900 17161598 ~ 17163074 (+)
G190513 NA non-coding downstream 3245 17236569 ~ 17320874 (+)
G190524 NA non-coding downstream 24680 17258004 ~ 17304690 (+)
G190533 NA non-coding downstream 65497 17298821 ~ 17299655 (+)
G190538 NA non-coding downstream 90107 17323431 ~ 17326474 (+)
G190539 NA non-coding downstream 107766 17341090 ~ 17343572 (+)
G190484 irf6,LOC106565674 other upstream 47846 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 109300 17119945 ~ 17123674 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other upstream 355136 16830909 ~ 16877838 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 1453138 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 1475793 15710930 ~ 15757181 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 201038 17434362 ~ 17446741 (+)
G190550 NA other downstream 250496 17483820 ~ 17493182 (+)
LOC103024479 LOC108413015 other downstream 275066 17508390 ~ 17513309 (+)
cdkn1a NA other downstream 455193 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 788928 18022252 ~ 18041509 (+)

Expression


Co-expression Network