c22h12orf10 (LOC107570120)


Basic Information

Item Value
gene id c22h12orf10
gene name LOC107570120
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17096066 ~ 17101615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682475.1
GGCGCTATAGAAGAAGAGTAGAGGAGCGGTGGTGCGCATGCGTGCGGGtcaggtgtggtgtgtgttagggATGATCCGATGAGAAtatttcagtgtgtgtttgtgtgtataaacagaatATCTATCAGAAGAGGTTATATAACTCGCGGGGCTCCGGGGTATAGAGGTTATATGCAGAGCGCTAAGAGAGCCTGTCTGGAGATCAGCACCATGAAGATCGGAACCCACAGCGGATCTTTTCACTGTGATGAAGTTCTGGCCTGTTATTTCCTCAAGCAGCTTCCTCAGTACCAGGATGCTGAAATAGTTCGGACGCGTGACCCGGTAGTGCTGGAGCAGTGTGACATAGTGGTGGATGTTGGAGGAGTGTTTGACCCTAAAAAGCACCGTTATGATCATCATCAAAGGTCTTTTGTAGAGACGTTTAACAGCCTGTGTCCGGAGAAGCCGTGGGTGACTAAACTGAGCTCAGCCGGTCTGGTTTATGTTCACTTTGGTCGGCAGGTGCTTTCCCACCTCACACACCTGCAGGAGGACAGCAGAGAACTGGGAATCCTCTATGATAAAATGTATGAGAACTTTGTGGAGGAGGTGGATGCAGTGGATAATGGGATTTCTCAGTGTGATGGAGAAGCTCGTTACACCGTGACCACATCCCTCAGCGCTCGCGTCGGGTATCTGAACCCGCGCTGGAACAGCGAGTCTCAGGACACTGAGCAGGGATTTCAGAAGGCCATGTCTTTGGTTGGAGTTGAGTTTCAGGACCGGCTGGATTACTACCAAAACGCCTGGCTTCCTGCACGAGTGGTAGTCGAGACCGCTGTTCAGACGAGACATCAGGTGGATCCCAGTGGAGAGATAGTGATGTTTGATCAGGGTGGATGTCCCTGGAAGGAGCATCTCTTTACCCTGGAGAAAGAGATGAAGGTGGAGGTGCCAATCAAGTTTGTGCTCTATCCAGACCAGAGCGGCCAGTGGAGAGTCCAATGTGTTCCAGCAGGACTCAACACCTTCCAGAACAGGTTGTCTCTGCTGGAGGAATGGCGTGGGGTGAGGGATGATGCTCTGTCTGAACTCAGCGGGATCTCCAGCTGTATTTTTGTCCACAGCAGCGGCTTCATCGGAGGAAATAAAACTAAGGAGGGCGCTCTGGAGATGGCCAGAAGAACCTTACAAGCAGGACCCAATCCAGGAAACGCCTCCAACGGCTGCTAAACTACATTTTATACGTTTAGTTATTGTTAAGTTTTGTTACAGTGTGACGTACGTGTGTGtttcacaataataaataaaatagccgACGTTTCCAGaa

Function

NR:

description
PREDICTED: UPF0160 protein MYG1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682475.1 True 1312 mRNA 0.50 7 17096066 17101615

Neighbor

gene id symbol gene type direction distance location
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding upstream 42002 17028248 ~ 17054064 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding upstream 485690 16604852 ~ 16610376 (+)
fbln2 fbln2 coding upstream 692650 16306852 ~ 16403416 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding upstream 859730 16193143 ~ 16236336 (+)
LOC103030596 LOC108415872 coding upstream 1251796 15838457 ~ 15844270 (+)
LOC103032680 NA coding downstream 2498 17104113 ~ 17107100 (+)
LOC103038691 NA coding downstream 115161 17216776 ~ 17223278 (+)
lamb3 NA coding downstream 139817 17241432 ~ 17265823 (+)
LOC103036408 LOC103036408 coding downstream 260810 17362425 ~ 17366729 (+)
LOC103036105 cacna1sa,LOC107667627 coding downstream 267922 17369537 ~ 17412071 (+)
G190466 NA non-coding upstream 52058 17006796 ~ 17044008 (+)
G190457 NA non-coding upstream 104758 16957076 ~ 16991308 (+)
G190462 NA non-coding upstream 105703 16987947 ~ 16990363 (+)
G190460 ece1,LOC106582992 non-coding upstream 124499 16966358 ~ 16971567 (+)
G190458 NA non-coding upstream 136550 16958734 ~ 16959516 (+)
G190482 NA non-coding downstream 23903 17125518 ~ 17130612 (+)
G190487 NA non-coding downstream 59983 17161598 ~ 17163074 (+)
G190512 irf6 non-coding downstream 87046 17188661 ~ 17193721 (+)
G190514 NA non-coding downstream 103737 17205352 ~ 17205836 (+)
G190486 NA non-coding downstream 109607 17211222 ~ 17224659 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other upstream 218228 16830909 ~ 16877838 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 1316230 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 1338885 15710930 ~ 15757181 (+)
G190050 NA other upstream 1731066 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 2251790 14797668 ~ 14844276 (+)
G190481 strip1,LOC106583081 other downstream 18330 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 79507 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 332747 17434362 ~ 17446741 (+)
G190550 NA other downstream 382205 17483820 ~ 17493182 (+)
LOC103024479 LOC108413015 other downstream 406775 17508390 ~ 17513309 (+)

Expression


Co-expression Network