map1lc3a (map1lc3a,LOC107551126,LOC107685654)


Basic Information

Item Value
gene id map1lc3a
gene name map1lc3a,LOC107551126,LOC107685654
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15710930 ~ 15757181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257667
CGCCTCTGGCTCGGAGTTGCTGACGAGGATcagaacaataataaaaacagagagGAATAAAACtacagattattattgttattttattcatcttaAACTACAATTATGCCTTCTGATAGACCTTTCAAACAGCGGCGGAGCTTCGctgaTCGCTGTAAGGAGGTGCAGCAGATACGAGAGCAGCATCCTAATAAAATTCCGGTCATCATTGAGAGATATAAGGGAGAAAAGCAGCTTCCCGTTTTGGACAAGACCAAGTTTCTTGTACCTGATCACGTCAACATGAGCGAACTGGTGAAGATTATCAGGCGTCGTCTGCAGCTGAACCCGACCCAGGCCTTCTTCCTATTGGTCAATCAGCACAGCATGGTGAGCGTGTCCACACCCATTTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACTTTCGGCTGCTAAGCTAACGGCTAACCTCCTCACGATTAGAGATTAGATTAGAGAGAGCGAGCAGAGAACGAGAAACGCCCAGGGAGCTAATGTGCTACGGCTAACCGAGGCCACGCCCCTTTTGTGTTTCTCtcttaaaaactacaaaaaaaaccccTTAGCTTCTCTCCTGCCATCTTCAAACTAACACTACCATTGTTGTGTCTCATTACGACACGAGTCCTCGTGCAACAGCACTGCTGTACCTGCTAGATTCACCCCTCGAttgcttgtgtttattttttagtttcgTTTTTAACCCCGcccacttaataataataataataataataataataataattattcattttttccccAGTTAGTGACACAGTAATGTATAAAGCCTGGGCGTTCAACGTAAGAAGACGTTCTGACCCTGAGCTCAGGCCTTGCAcgttcttttaattttaaatttttgattttatttgattttatttgtacCGGTGTGTAAAATAATTAGCATAATTAGCAACACTTTTCCTGTCATTTGTAAATACATGTAGGTGAGTgctattataatttttataattataaaagtaAGTGTGTAGTTTAGGCTTTGTTGCATTTACTGCTTGCTTGTAGTAATCAGCCAAATCCGACCGAATCTGTACGACTCTGACGCTGGAgtgagatttttattttagtctttCCTTAAAGTAAAAcgaagtgaaagaaagaaagaaacaaagaaagagagaaactgtAGACTTCCTAACATGTACTCGTATTACCTGCTGCAGTAACATCTATTCACCACtagagtgaataaaaaaaaaaaaaacacacacacagtgttacgcaccctgttttaaataaagccCTACATCTGGATAGGATTAGTTACTCACTagtatttcacacttctactctacagtgataaaactcctgcatccggactgcaatttataaaacaggaggaccagtgaggtcACATGACCTCATCGCGGAGTTCAGTAGCCCCTCCAtctccactcactgttgtgttttttttttctacgtggatctccgtggaaaccgtggcgcatccaaagtgtaattacggtgcgcggcagtggacaaatatctaatttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattagagagaaactaatctaatctaatcctgtcctgtccggatagggatTTGATAACGATATACATTGCCCACATACGTATTATGATATATCACATCACGATACAGTGATTTTGCGATACttgatatatataaatatatatgtatgagtACCAGTCacaaatttggacacaccttaaatatggaattatttagtaaacttaaaaaagaccatcaaaaacttcataattattataataatgatgaaactggcattcATCAGCTCTGctccagaaaaataaataagagtaagagtttcctctgttttacaggataagttccgcagagttaccagcttacagtgttttttaggtttgtttaacacttttatttactacacctttattttaagttactacatgattccttatatgtttcttcatagtcttgATAGATAATTTtagaaatgcttaaaatcaATACTACACAGCAAagctagacaaaatatatgtaaattgagacaaATGTTtaaactaagcaaaaaaaatctgcaaatgGGGTGAGCgaatttttcttagtaagaatttttttaaatgattaatcacaaagtttcaaaatgagtgaaataagcctaaattaagcaaaaagtGGCTTAAATTTGTAGACAAGAATCAATAAAACTTGACTAGTAACTTTCTGTGCTTATTTTGAATCTAAATTACTTAAGAAAAGGTGAAACTTCTAAGTGAGACTGAATAAGAtaatattcctaaaataagtaaaaacaaaatctaCACTTACGATGCTTAGTAAGACCAAAAatgtatcagagaaaaaaataagatttattgccttaaaactagttaatttcacttgctaagaataaggtttttgcagtgtatatatcacaatattgatatatatattttgtcccaGCCCTAGTTAGGAGTTAATTTGACCCGTGTGTTAAACTGTGTTCAGACTCGTCTCCTCGCTGAGCTCAATGTTGGTTTACATGCTGTTTTTAGTTCATATTTCTGCCGCCAGGTTTGCAGAATGCGCCGTGCATTTACAAATATAGCTGTAGGAGTCAGTCGAGCCTAAAATATGCGAGTATGAATGcggcctgtgtgtgtttgtgtgtgaacgCTTAACTCCAGTGCAGCCGGAGGAACAGAACAACACTACATAGATGGCAGGCGAGGTTTGTTTAGGCACTACAACactgtaactgtaataaatataataaatataataaacagacCTGAATATGCTTCTTTTGCACAAATGAAACAGAACAGCTAAGAGAGGATAAACTCTAAACTCTTTGAAATTGAGAACTCTAATATAATTGTAGCACAGAATCGTTGTATTTTCTATCCAGCTTCTTTCCGTTTACGTTTTCCATCACGACGCGACGCGTTTGCCTTCTGTCCAAAACTTCAGTGAAGGGTTTATATGATGCACTACGTATCttgcatgttttattttcttcctcaactcttttttttatatatatatattgatttatgCTGTAGATTTAATTATTTCGACTTTATTTAACGCAGAAAAACAAGTCTTTTTAGATGTTTTCAaaccaaaaaaagagaaaaaaaaaaagaatgaaaacctgaaataaataaatatgtatgt
>TU257668
CGCCTCTGGCTCGGAGTTGCTGACGAGGATcagaacaataataaaaacagagagGAATAAAACtacagattattattgttattttattcatcttaAACTACAATTATGCCTTCTGATAGACCTTTCAAACAGCGGCGGAGCTTCGctgaTCGCTGTAAGGAGGTGCAGCAGATACGAGAGCAGCATCCTAATAAAATTCCGGTCATCATTGAGAGATATAAGGGAGAAAAGCAGCTTCCCGTTTTGGACAAGACCAAGTTTCTTGTACCTGATCACGTCAACATGAGCGAACTGGTGAAGATTATCAGGCGTCGTCTGCAGCTGAACCCGACCCAGGCCTTCTTCCTATTGGTCAATCAGCACAGCATGGTGAGCGTGTCCACACCCATTTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACTTTCGGCTGCTAAGCTAACGGCTAACCTCCTCACGATTAGAGATTAGATTAGAGAGAGCGAGCAGAGAACGAGAAACGCCCAGGGAGCTAATGTGCTACGGCTAACCGAGGCCACGCCCCTTTTGTGTTTCTCtcttaaaaactacaaaaaaaaccccTTAGCTTCTCTCCTGCCATCTTCAAACTAACACTACCATTGTTGTGTCTCATTACGACACGAGTCCTCGTGCAACAGCACTGCTGTACCTGCTAGATTCACCCCTCGAttgcttgtgtttattttttagtttcgTTTTTAACCCCGcccacttaataataataataataataataataataataattattcattttttccccAGTTAGTGACACAGTAATGTATAAAGCCTGGGCGTTCAACGTAAGAAGACGTTCTGACCCTGAGCTCAGGCCTTGCAcgttcttttaattttaaatttttgattttatttgattttatttgtacCGGTGTGTAAAATAATTAGCATAATTAGCAACACTTTTCCTGTCATTTGTAAATACATGTAGGTGAGTgctattataatttttataattataaaagtaAGTGTGTAGTTTAGGCTTTGTTGCATTTACTGCTTGCTTGTAGTAATCAGCCAAATCCGACCGAATCTGTACGACTCTGACGCTGGAgtgagatttttattttagtctttCCTTAAAGTAAAAcgaagtgaaagaaagaaagaaacaaagaaagagagaaactgtAGACTTCCTAACATGTACTCGTATTACCTGCTGCAGTAACATCTATTCACCACtagagtgaataaaaaaaaaaaaaacacacacacagtgttacgcaccctgttttaaataaagccCTACATCTGGATAGGATTAGTTACTCACTagtatttcacacttctactctacagtgataaaactcctgcatccggactgcaatttataaaacaggaggaccagtgaggtcACATGACCTCATCGCGGAGTTCAGTAGCCCCTCCAtctccactcactgttgtgttttttttttctacgtggatctccgtggaaaccgtggcgcatccaaagtgtaattacggtgcgcggcagtggacaaatatctaatttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattagagagaaactaatctaatctaatcctgtcctgtccggatagggatTTGATAACGATATACATTGCCCACATACGTATTATGATATATCACATCACGATACAGTGATTTTGCGATACttgatatatataaatatatatgtatgagtACCAGTCacaaatttggacacaccttaaatatggaattatttagtaaacttaaaaaaaaaagtgttaaacaaacca
>XM_007233857.3
GCGTTCTGCGCATGTCTTTATCGCCTCTGGCTCGGAGTTGCTGACGAGGATcagaacaataataaaaacagagagGAATAAAACtacagattattattgttattttattcatcttaAACTACAATTATGCCTTCTGATAGACCTTTCAAACAGCGGCGGAGCTTCGctgaTCGCTGTAAGGAGGTGCAGCAGATACGAGAGCAGCATCCTAATAAAATTCCGGTCATCATTGAGAGATATAAGGGAGAAAAGCAGCTTCCCGTTTTGGACAAGACCAAGTTTCTTGTACCTGATCACGTCAACATGAGCGAACTGGTGAAGATTATCAGGCGTCGTCTGCAGCTGAACCCGACCCAGGCCTTCTTCCTATTGGTCAATCAGCACAGCATGGTGAGCGTGTCCACACCCATTTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACTTTCGGCTGCTAAGCTAACGGCTAACCTCCTCACGATTAGAGATTAGATTAGAGAGAGCGAGCAGAGAACGAGAAACGCCCAGGGAGCTAATGTGCTACGGCTAACCGAGGCCACGCCCCTTTTGTGTTTCTCtcttaaaaactacaaaaaaaaccccTTAGCTTCTCTCCTGCCATCTTCAAACTAACACTACCATTGTTGTGTCTCATTACGACACGAGTCCTCGTGCAACAGCACTGCTGTACCTGCTAGATTCACCCCTCGAttgcttgtgtttattttttagtttcgTTTTTAACCCCGccca

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

NR:

description
microtubule-associated proteins 1A/1B light chain 3A

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257667 True 3252 TUCP 0.37 4 15710951 15721041
TU257668 False 1847 TUCP 0.40 5 15710951 15757181
XM_007233857.3 False 787 mRNA 0.47 4 15710930 15718555

Neighbor

gene id symbol gene type direction distance location
foxj3 foxj3,LOC107551120,LOC107749445 coding upstream 22209 15528310 ~ 15688721 (+)
utp3 NA coding upstream 193490 15506398 ~ 15517440 (+)
LOC103025870 NA coding upstream 359964 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 639726 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 697050 14988757 ~ 15013880 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 28265 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 45438 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 81276 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 435962 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 549671 16306852 ~ 16403416 (+)
G190089 NA non-coding upstream 76271 15633890 ~ 15634659 (+)
G190085 NA non-coding upstream 107027 15598152 ~ 15603903 (+)
G190086 NA non-coding upstream 132959 15577082 ~ 15577971 (+)
G190043 ppcs non-coding upstream 190864 15490071 ~ 15520066 (+)
G190068 NA non-coding upstream 239394 15446216 ~ 15471536 (+)
G190104 NA non-coding downstream 7972 15765153 ~ 15766268 (+)
G190116 NA non-coding downstream 53364 15810545 ~ 15815166 (+)
G190125 NA non-coding downstream 89345 15846526 ~ 15847008 (+)
G190133 NA non-coding downstream 107159 15864340 ~ 15866179 (+)
G190137 NA non-coding downstream 151854 15909035 ~ 15909622 (+)
G190050 NA other upstream 345930 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 866654 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1539309 14114204 ~ 14171621 (+)
G189621 NA other upstream 1602822 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1666203 13973779 ~ 14044727 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 20624 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1073728 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1362764 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1423941 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 1677181 17434362 ~ 17446741 (+)

Expression


Co-expression Network