G190125


Basic Information

Item Value
gene id G190125
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15846526 ~ 15847008 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257722
gatggttacataaatatatagacagacagacatggatagacagacaggtaggtagaCATACTGTATAAAGGTGGATATATGGTTagaaggatttgattgcactgATCTTCTGCTCctctgatagatagatagatagatagatagatagatagatagatagatagacataaataggtagatagatggttagatataaaaagaaatagacagacagacaaagagatagacagataggtagatagaaagtcagatagatagatggttagatacatagatagacagacagacaggtaggtagacagacaggtagaaaggtagataaatagataagCAGACAAAAGGGTAGGTAGACGGACAtctataggtagatagatagatagatagatagatagatagatagatagata

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257722 True 407 lncRNA 0.34 2 15846526 15847008

Neighbor

gene id symbol gene type direction distance location
LOC103030596 LOC108415872 coding upstream 2256 15838457 ~ 15844270 (+)
LOC107196954 NA coding upstream 36500 15802619 ~ 15810026 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding upstream 46590 15785446 ~ 15799936 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding upstream 157805 15528310 ~ 15688721 (+)
utp3 NA coding upstream 329086 15506398 ~ 15517440 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 346135 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 459844 16306852 ~ 16403416 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding downstream 757844 16604852 ~ 16610376 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding downstream 1181240 17028248 ~ 17054064 (+)
c22h12orf10 LOC107570120 coding downstream 1249058 17096066 ~ 17101615 (+)
G190116 NA non-coding upstream 31360 15810545 ~ 15815166 (+)
G190104 NA non-coding upstream 80258 15765153 ~ 15766268 (+)
G190091 NA non-coding upstream 124232 15669675 ~ 15722294 (+)
G190089 NA non-coding upstream 211867 15633890 ~ 15634659 (+)
G190085 NA non-coding upstream 242623 15598152 ~ 15603903 (+)
G190133 NA non-coding downstream 17332 15864340 ~ 15866179 (+)
G190137 NA non-coding downstream 62027 15909035 ~ 15909622 (+)
G190142 NA non-coding downstream 171297 16018305 ~ 16044503 (+)
G190147 NA non-coding downstream 316334 16163342 ~ 16191135 (+)
G190148 NA non-coding downstream 317313 16164321 ~ 16203757 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 66690 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 89345 15710930 ~ 15757181 (+)
G190050 NA other upstream 481526 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 1002250 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1674905 14114204 ~ 14171621 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 983901 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1272937 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1334114 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 1587354 17434362 ~ 17446741 (+)
G190550 NA other downstream 1636812 17483820 ~ 17493182 (+)

Expression


Co-expression Network