G190043 (ppcs)


Basic Information

Item Value
gene id G190043
gene name ppcs
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15490071 ~ 15520066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257614
aaaaacactgaatttaaggtgtgtctaaacttttcaCCGGTACTGTATGCTTCATATGATTATGATCGTATGATTAAATCGAATCATCGGTTCATGAACTCAGTGTGAGCAGCAGACAGGTTGCTGACGATCTTCTCCTCGATCTCGATCCCTTTCTGAACGTCGTCGTCGGTGAGGGTTAGCTCATGCTGGGTGGTTTTGGTCACGATGACGACGTATCCGCGCAGCGTGTCCAGGACGTTGGCCACCACGACCTGGTGATTATAGATGTCCAGAGCTCGCCGGGCGCGCTCCAGGAGGATGGACGGATCCGTTTCCAGCTTAAACGAAATGACAAAAGCTTGTGGAGCCCAGTCCTTCACCAGGGGCTTCAGCATCTTGGGGACCATCTTCAT

Function

symbol description
ppcs Predicted to enable phosphopantothenate--cysteine ligase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human PPCS (phosphopantothenoylcysteine synthetase).

NR:

description
PREDICTED: phosphopantothenate--cysteine ligase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257614 True 395 lncRNA 0.50 2 15490071 15520066

Neighbor

gene id symbol gene type direction distance location
LOC103025870 NA coding upstream 139105 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 418867 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 476191 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 581125 14899354 ~ 14908946 (+)
LOC103047572 LOC108424606 coding upstream 601304 14859484 ~ 14888767 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding downstream 8244 15528310 ~ 15688721 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 265380 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 282553 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 318391 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 673077 16193143 ~ 16236336 (+)
G190068 NA non-coding upstream 18535 15446216 ~ 15471536 (+)
G190067 NA non-coding upstream 44306 15445120 ~ 15445765 (+)
G190063 NA non-coding upstream 66789 15420295 ~ 15423282 (+)
G190052 NA non-coding upstream 121514 15367806 ~ 15368557 (+)
G190041 NA non-coding upstream 133241 15352985 ~ 15356830 (+)
G190086 NA non-coding downstream 57016 15577082 ~ 15577971 (+)
G190085 NA non-coding downstream 78086 15598152 ~ 15603903 (+)
G190089 NA non-coding downstream 113824 15633890 ~ 15634659 (+)
G190091 NA non-coding downstream 149609 15669675 ~ 15722294 (+)
G190104 NA non-coding downstream 245087 15765153 ~ 15766268 (+)
G190050 NA other upstream 125071 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 645795 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1318450 14114204 ~ 14171621 (+)
G189621 NA other upstream 1381963 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1445344 13973779 ~ 14044727 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 190864 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 257739 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1310843 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1599879 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1661056 17181122 ~ 17185128 (+)

Expression


Co-expression Network