G190570


Basic Information

Item Value
gene id G190570
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17540386 ~ 17553241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258389
ctcggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttataatttggtcaaatcaaagacactcataatttttaattgttctcttgtttttttaaaaacggtATATTTAAAACCAAAATTTTGATCCAATGTAAAACTgatgtgcacaaataaatcaattctGATGTTGGAGATTAATGTTGTTCCAATGCTTTACCGATGGAACGTCTGATTCAACGTCTTTATGCTGTCTGGGagtgctgacacagatgtgcaaatgcacaaacacagcttGTTTAGCTTGACGAGAAGTATTACAAATTtttgtttcatattttcatgtgtttttcctGAAATGCATGATGATTCGGGTTTAGCAGAGCACACCACAAAATACAGCCCCCGAAAACAAAAGGGCATTCTGGACTAAAAGATGTCGTATTTTCTTGAAAGCTGGAATTTAATACACATGAAACAGAAGTTTCATACTGGTGGAACTGGCACTAATTAGTTATAGAGAGCGATGGGATTAAAGACTGCCTTAAAAATTGAAAGGCTGTCTACTGGAAGAATGGGCACTAATTAGTAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258389 True 686 lncRNA 0.36 2 17540386 17553241

Neighbor

gene id symbol gene type direction distance location
dram2 LOC108413005 coding upstream 75299 17458210 ~ 17465087 (+)
LOC103036105 cacna1sa,LOC107667627 coding upstream 128315 17369537 ~ 17412071 (+)
LOC103036408 LOC103036408 coding upstream 173657 17362425 ~ 17366729 (+)
lamb3 NA coding upstream 274563 17241432 ~ 17265823 (+)
LOC103038691 NA coding upstream 317108 17216776 ~ 17223278 (+)
LOC103023632 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 coding downstream 30911 17584152 ~ 17586613 (+)
LOC103033874 arl8a,LOC107722853,LOC107671521,LOC107569762,LOC107750681 coding downstream 75599 17628840 ~ 17640167 (+)
LOC103033562 LOC108412444 coding downstream 185246 17738487 ~ 17749318 (+)
srsf3 srsf3,srsf3b,LOC108413700,LOC107569752,LOC107690536 coding downstream 202703 17755944 ~ 17766863 (+)
LOC103033239 tmcc2,LOC107569750,LOC107690538,LOC107656904 coding downstream 244360 17797601 ~ 17801504 (+)
G190589 NA non-coding upstream 10510 17529469 ~ 17529876 (+)
G190581 NA non-coding upstream 34229 17493591 ~ 17506157 (+)
G190555 NA non-coding upstream 66907 17468901 ~ 17473479 (+)
G190558 NA non-coding upstream 121610 17414275 ~ 17418776 (+)
G190559 NA non-coding upstream 123450 17414782 ~ 17416936 (+)
G190603 NA non-coding downstream 64149 17617390 ~ 17618763 (+)
G190572 NA non-coding downstream 66683 17619924 ~ 17652090 (+)
G190568 NA non-coding downstream 92603 17645844 ~ 17653986 (+)
G190600 NA non-coding downstream 110992 17664233 ~ 17701831 (+)
G190613 NA non-coding downstream 137805 17691046 ~ 17716833 (+)
LOC103024479 LOC108413015 other upstream 27077 17508390 ~ 17513309 (+)
G190550 NA other upstream 47204 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 93645 17434362 ~ 17446741 (+)
G190484 irf6,LOC106565674 other upstream 355258 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 416712 17119945 ~ 17123674 (+)
cdkn1a NA other downstream 135276 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 469011 18022252 ~ 18041509 (+)
tmem43 NA other downstream 917356 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 999613 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 1145356 18698597 ~ 18722747 (+)

Expression


Co-expression Network