RNA id: TU256474


Basic Information

Item Value
RNA id TU256474
length 1069
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G189216
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12769581 ~ 12770649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaaaccaccaagctgaactgcttgattttctgcaccaggagtgagtagcataaagttatccaaaagcagtgtgtaagactggtggaggaggacacaatgccaagatggatgaaaactaattaaaaccagggttattttaccaattattgattgttatttttttccagagctgtaagttaatgctgaggtttggcagtataaatgaatgcaggattactatttggcaaacaacaggccaCTGTTGCACTTTCTATTCATGTGTTGTACCTGCTTATTAATGGTATTTGCAATGGAATTTACACCTTAATtaataaccctttataaaccctttataaaggagcctatTTTTAAGGTGGTACCCAACCAACTTTTAAACCATCCAACACTGAATGAAAATATCAGTAACACACTGATAAGCACCTAACAATCAACGTCAGTGCAATAAACAACAcagaaactttattttaaaagagaaatgttTGATCTTTCATATATGTATACGTATAAATAGTAAAGAAGATACTTCACGGTATCTTTATAGAAAATGGTGAAGATGAGTTCGAGGAATCCAGGCTGGCTGGATCAAACTGTTTTCAAGTATTGTTTTCAAGTCCTGCAGGTGAAGCTCCTGAGGAGTTTATACTGGACCACTTCATAGAAAAATCTTATTTACCAAACTGGATCATACTTAACCATCAGTTAAAACATGTTCAGTGTCTGAGGTTTGCTTCTATAGTTTTGCACCGGAGCTACAAGGATAATACAGATAAATACATGTAATAGATTAACgaggctgtgttcagactacAGACAAACTGGATTTGTGGACAGTCTCAGTCTCAATAGATCTGATTAAGGAAACACTGTTGTTTGTAAGTAATCAGATTGGATTTGCCTGTCTGGACATCACAACCTAtcagtatgggttgctgtggtattgagTTTGTCGTCATTAGCTAACCATCCGCACTTCTGTCACTCTGGATTTGATAGGAAAATACATTGAGATCTGATTTAAGCCGAACTGAGACACATCTATACAAatctgggtaccactttaaaataaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256486 lncRNA upstream 43 12769144 ~ 12769538 (+) True G189228
TU256439 lncRNA upstream 171590 12593483 ~ 12597991 (+) True G189186
TU256435 lncRNA upstream 203445 12565573 ~ 12566136 (+) True G189185
TU256429 lncRNA upstream 242961 12526268 ~ 12526620 (+) True G189182
TU256423 lncRNA upstream 245667 12523007 ~ 12523914 (+) True G189180
TU256481 lncRNA downstream 46538 12817187 ~ 12819525 (+) False LOC111195379
TU256497 lncRNA downstream 89874 12860523 ~ 12861588 (+) True G189239
TU256503 lncRNA downstream 105245 12875894 ~ 12876136 (+) True G189243
TU256499 lncRNA downstream 110216 12880865 ~ 12884695 (+) True G189241
TU256507 lncRNA downstream 134682 12905331 ~ 12956448 (+) True G189246
XM_007254545.3 mRNA upstream 58537 12689815 ~ 12711044 (+) True rrp9
XM_007254547.3 mRNA upstream 58537 12689815 ~ 12711044 (+) False rrp9
XM_022682393.1 mRNA upstream 114478 12624170 ~ 12655103 (+) True sort1
XM_007254542.3 mRNA upstream 146661 12614920 ~ 12622920 (+) True psma5
XM_022682389.1 mRNA upstream 204558 12547650 ~ 12565023 (+) False zbtb40
XM_022682396.1 mRNA downstream 46909 12817558 ~ 12820082 (+) True LOC111195379
XM_007229609.3 mRNA downstream 115808 12886457 ~ 12902687 (+) True atrip
XM_022682397.1 mRNA downstream 117073 12887722 ~ 12902687 (+) False atrip
XM_007229615.3 mRNA downstream 170360 12941009 ~ 12944907 (+) False rab43
XM_007229614.3 mRNA downstream 170441 12941090 ~ 12948543 (+) True rab43
XR_002651607.1 other upstream 224480 12530547 ~ 12545101 (+) False usp48
TU256360 other upstream 328848 12439603 ~ 12440733 (+) True G189141
TU256257 other upstream 533489 12233201 ~ 12236092 (+) False G189073
TU256169 other upstream 768928 11690886 ~ 12000653 (+) False fam19a1
TU256538 other downstream 225023 12995672 ~ 12996904 (+) True G189268
XR_002651609.1 other downstream 644420 13415069 ~ 13427065 (+) False LOC103033837
TU257060 other downstream 1336653 14107302 ~ 14108108 (+) True G189621
TU257621 other downstream 2592043 15362692 ~ 15365000 (+) True G190050
TU257667 other downstream 2940302 15710951 ~ 15721041 (+) True map1lc3a

Expression Profile