RNA id: XM_022682388.1


Basic Information

Item Value
RNA id XM_022682388.1
length 3458
RNA type mRNA
GC content 0.51
exon number 14
gene id zbtb40
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12547650 ~ 12565023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGGAGACAACACGCATGCGCAGAAGCACCCTCGCCATGTTTGGAATGAATCTTTATTGCGGAGCTGTTTGGCCTTTGGAGGAGTTTAAATAAAGAGCCGGATTATTTGAATAACACTGAAGGTGTCTGATGGAGCTGCCGAACTACAGCAGGCAGCTGTTGCAGCAGCTGCAGGCTTTGCGGAAAGAGGGCCAGTTCTGTGACTGCACCATTCTGGTGGAGGGCGCCGCCCACCCGGCCCACAAGGTGGTCCTGGCTGCTTCCAGCCTGCTCTTCAAGTCTCTGCTTGAGAGCTCTGACAGCATTTCCATCGACTCGGCCGTGGTGACGTCCCAGGAGTTCTCCTCGCTGCTGGACATGGTTTACCTGGGCAGGCTCCCCCCAGGCAAGCACAACTTCACCCGGGTCATCGCAGCCGCAGACAGCCTGCAGATGTTTGACCTGGCTGTCGGCTGCAAGAACATTCTCAATGACTTGGTGAAGCTGGTCCAGCCCAATGGCGCTCAGGGTTTAAAGGCAGAACAGGCAGATCTCCAGGTGAATGATCCTTCAGGTGAGAGGGGCGGAGCAGCTGAGCtaggttcttcttcttcttctgaaaGATGTTCAGGTCTTGCTGTAGAAGAGGGTGTGTCTGACTCTGCTGGGGTTTCTGAGGACGGTGTGGAGAACACAGAAGAAATGATGGGGTCAGATGATCTGAAGAGCAATAAGAAGAGTGGAACAGCCAGTGGAGGATCTTCTGATATTGATGAAGAGGGCACTGCAGAGCTGCTTTCTCAGAAGCGAGATGAGATCCTGAAAACTCTGCAGGACGTCCAGCCGTGGATTAAAGCCCTTCGCACCTGGGATGCTCTCCCCTCTACACACCGACAGATCATTCTGGAATGTTTTGAGGGAGATGAAGGGGTTGATGTGGTGTTCCAGCGTCTGGTGAATCGACTTAAAGACGAGCGAAATCTCTCAGCTCAGACTTTCCTCACACTGCTGGAACAGGTTAAGAGCCTAAAGCTTGATCTGGATGAAATGATGGTGGATCAGACTGGTCCAGAACTCAAAGTTCAAACTCAAGTGGACGTCTTATTAAAGCACAGAGATCTGATTCTGGAGACGTTCAGTGGCATCACTGATCTGGAAGGAGCAGCAGGCTGTTCCGACAGTCATAACGATGACATCAGTGAGTTTCTGCAGAGCTGTTGGGGGACTGACGGTGTAGCGGAGTCCATGCAGCAGGTTCTGGACAGAGTGTTGAACAGAGACGTGCATCATGTACCGCAGCTTTGCCGCCTGCTGACCATGAGTCAACAAAGCTTCCCCCAGCTCTCCCttctgactgaggagctcaaccAAGCAGATCTCATCACACCTTCTCAGGATGCAGGCTCTgagaaggaggaggatgaggaggaggatgaaggaGATAGCAGACAGACTGCGCTACAGAGGAAAGGTGTGGCTGTTTCCTACAGCTGTGATTGGTGCAACAAGAGCTTTGACTTTAAGTGTCGTCTGCTGAGGCACAGGAAGCGATGCGCGATGTCTCCGGATAAAGCCCAGCACTGCACTGACTGTTCCCAGGTCTTTCCCTCCCTGACTGCCctacagcagcactgcagcCAGGCCCACGGCGCCCCCTCTGCCAAGAAGAGGAAAACGCAGCCAGTAGCCTGTGAGCTCTGTGGAAAAACCTTTAAACACCCCTCAGGTCTGCTGTACCACAAACGGACCGAGCATTTGGAGGAAAGGCCGTATGTGTGTGAGGAATGTGGAGCCAAATTTTCTGCCAACTCCTCACTGAAGAACCACATGCGTCtgcacactggagagaaaccctaCCAGTGTAAACACTGCGACATGAGCTTCACCGTGGCCGCCGCGCTGTCTTACCACACCAAGAAGAAGCATGCAGAAGGTAAAATGTATTCCTGTCAGTACTGCTCGTCTACGTTTGCGCAGTCCATCGAGCTGACTCGCCACGTCCGAACGCATACCGGCGACAAACCGTACGTATGCAGGGAGTGTGGAAAAGGATTCAGGCAAGCCAACGGACTCTCCGTACACCTGCAGACCTTTCACAATGTTGCAGAACCCCACGACTGTCAGAAGTGTCGGGTGAGTTTCGGTTCGCTAGACGAACTCCGCGAGCACATCCAGGAGGTTCATCCTAAAGAACTGCACCAGTGCCCTGAATGCAGCCGGATCCTCAGCACTGCAGCTCAGCTGGAGAAGCACATGAGCATCCATGACGGCAGCAAACCCTACAGCTGCAAGAGCTGCAACAAATCCTACCAGACTCTCTCAGGTTTATGGTACCACAATCGCACCACCCACCCAGACGCTGTCACGACGGAGGGCAGCAGATCACTCTCGCCCATACTGCGCTGTAAAATCTGCGACAAAGCTTTCTGCAACAAGAGCAGCCTGTTCAAACACCACATAACCAAACACCCAGaaaccCGCTCTGCTGCTGAAGGCTTGGGTGAGAAGGAGGCACAGGCAGTTGAAGGCTTGCTGTGGAGGTGTGTGTACTGTGGATGTGCAGCGAGCAGTGAGGAGGAGTTGCAGCAGCATGTGTCCAGCGAGCATGTGAGCCAGCAGGGGTCCGTGTTTGGCTGCGTGGTCTGTTCGCTGACCTTCTCCTCTGAATCTGAGTTTCAGCACCATTTCCTCACCACACACCTGCAGGTCATCCAGGAGGAAGAGCCCACACAAATGGTGATCCACACACAAGATACCTCAGCTGTAGGGGCGGAGCAAATTTCCGAGCTGGACCAGTCGCAGATGGACTGCTCTCAGCAGGTGTTTGTTGCCCTGGGCGATGGTGGGGAGTCGGCGGCTGGCTCGGAGATCGTAGCCGTCAATATGGAGGACCTGCTGACGGGCAGAGTCACACTGATCTGCGAGGAGAATCAGTAGGGTTGTGTTTCTGCACCCCGGCTGGTCTGTTGGTCTCCACATAGCAGATGCTACAGCAAACTGATCCCAAACCAAATCTTCAATCTGCCGTGTTTCATTCCCGCCCTCAGCTTCTTCAGCAGGCGTATTTATTTATAGACTGTGGgactgatcacacacacaaatcacgTCAAACTGAGAGAATAGCATCATCAAACACTACAAAAGATGCTGTTGACATGATGCTGTGAGTGACAGCATCTGAAATGATGTGGGCAGTACagctaatatttaatatttctcacTAAGGCACTCTGTGTACGAATATTGTTATGTAAATTACTTAGAGGAGTCAAAATTATGGAACAAGTGCAGAGCCTGCAGAGGAAAGTTTGATAATTTTATTAGATTACAGctgtttattttaagaaaacattCCTAGAAATAGGCAATATAAGTTTGCTTATAATTGAAGTTGCATTTACatggaaatacagctctggaaaaaaattaagaggcctcttcagtttctgaatcagtttttctgattttgctatttat

Function

GO: NA

KEGG:

id description
K10512 ZBTB40; zinc finger and BTB domain-containing protein 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256429 lncRNA upstream 21030 12526268 ~ 12526620 (+) True G189182
TU256423 lncRNA upstream 23736 12523007 ~ 12523914 (+) True G189180
TU256421 lncRNA upstream 25440 12521485 ~ 12522210 (+) True G189179
TU256420 lncRNA upstream 28220 12518864 ~ 12519430 (+) True G189178
TU256413 lncRNA upstream 41738 12505356 ~ 12505912 (+) True G189175
TU256435 lncRNA downstream 550 12565573 ~ 12566136 (+) True G189185
TU256439 lncRNA downstream 28460 12593483 ~ 12597991 (+) True G189186
TU256486 lncRNA downstream 204121 12769144 ~ 12769538 (+) True G189228
TU256474 lncRNA downstream 204558 12769581 ~ 12770649 (+) True G189216
TU256481 lncRNA downstream 252164 12817187 ~ 12819525 (+) False LOC111195379
XM_015607192.2 mRNA upstream 1198 12529039 ~ 12546452 (+) False usp48
XM_007254538.3 mRNA upstream 1198 12529121 ~ 12546452 (+) True usp48
XM_022682386.1 mRNA upstream 1198 12529395 ~ 12546452 (+) False usp48
XM_007254539.3 mRNA upstream 1198 12529693 ~ 12546452 (+) False usp48
XM_022682387.1 mRNA upstream 6823 12530547 ~ 12540827 (+) False usp48
XM_007254542.3 mRNA downstream 49897 12614920 ~ 12622920 (+) True psma5
XM_022682393.1 mRNA downstream 59147 12624170 ~ 12655103 (+) True sort1
XM_007254545.3 mRNA downstream 124792 12689815 ~ 12711044 (+) True rrp9
XM_007254547.3 mRNA downstream 124792 12689815 ~ 12711044 (+) False rrp9
XM_022682396.1 mRNA downstream 252535 12817558 ~ 12820082 (+) True LOC111195379
XR_002651607.1 other upstream 2549 12530547 ~ 12545101 (+) False usp48
TU256360 other upstream 106917 12439603 ~ 12440733 (+) True G189141
TU256257 other upstream 311558 12233201 ~ 12236092 (+) False G189073
TU256169 other upstream 546997 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other upstream 740555 11806708 ~ 11807095 (+) True LOC111195378
TU256538 other downstream 430649 12995672 ~ 12996904 (+) True G189268
XR_002651609.1 other downstream 850046 13415069 ~ 13427065 (+) False LOC103033837
TU257060 other downstream 1542279 14107302 ~ 14108108 (+) True G189621
TU257621 other downstream 2797669 15362692 ~ 15365000 (+) True G190050
TU257667 other downstream 3145928 15710951 ~ 15721041 (+) True map1lc3a

Expression Profile