RNA id: XM_007254539.3


Basic Information

Item Value
RNA id XM_007254539.3
length 3945
RNA type mRNA
GC content 0.47
exon number 28
gene id usp48
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12529039 ~ 12546452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACAGTAGTTACTGGCTAATGCATCAGCATCACAGAgATGGCTCCTCGTATACAGCTGGAAAAAGCTGCCTGGAGATGGGTTGATTCAGTGAGACCAGAGGACATCACACAGGAACATATCGACTTAGCTTACAGGATCGCTGTATCCGCATGTAAAAGGGGAACATGCCGGAGGAACTGCAAAGGGAACCCCAACTGTTTAGTTGGAATCGGGGAACATTTGTGGTTGGGGGAAATTGATGAAAATACCTTCCACAACATTGATGACCCAAACTCTGAGCGAAGAGACAAGAACACTTTTGTGGGCCTGACAAATCTTGGTGCCACGTGTTATGTAAACACCTTCCTCCAGGTGTGGTTCCACAACCTGGAGCTGCGCAGGATGCTCTACATGTGTCAGAATTCCAGGGCTGAAGGGCACAACATAGAGTCAGATTATGAACCAAGGACGATATGTGAGCACCTACAGTACCTGTTTGCACTGCTGCAGAACAGCAACAGACGATACATCGATCCCTCGGGTCTGGTGAAAGCACTGGGGCTTGATACGGGGCAGCAGCAGGATGCACAAGAGTTTTCCAAGCTCTTCCTTTCCCTTCTCGAAGACACTTTATCCAAGCAGAAGGACCCAAGCCTCCAAAACGTTATTCAGCAGCAGTTCTGTGGGCAGTTTTCTTATGTTACAGTATGTAACCAGTGTAGCCGCTCGTCTGCTCTTCCATCTCGGTTCTACGAGCTGGAACTCAACATCCAAGGGCACAAAAACCTGACTGAGTGCATCACTGAGTTCCTCAAGGAGGAAAAGTTAGACGGGGACAATCGCTACTACTGCGAGAGCTGTCAGAGTAAACAAAGTGCCACACGACGAATCAAGCTCCACAGCCTTCCACCCACGCTCAACCTTCAGCTAATGCGCTTTGTGTTCGATAGACAGTCTGGTCACAAGAAGAAACTCAACACCTTCATCAGTTTTCCAGAAGTCCTCGACATGTCTCCGTTTTTGGAAGCGAAAGatgagaAGTGCACATATGAGCTGAGCGCTGTGCTGATCCATCGCGGTGTGAGCGCCTACTCCGGACACTACATCGCTCACGTACGAGACGCCCGCACCAACGACTGGTACAAGTTCAACGATGAAGAGATTGAGAAGATGGAGGGCAAAAAGCTGCAGCTGGGAACAGAGGAGGATTTAGCTGAAACTGTCAAATCTCAGACCCGAAAACCCAAATCTAGCAAAGGCTATCACTGCTCCAGAAATGCTTACATGTTGGTGTATAAACTTCAGATGGAGGAGGCAGACCAAACTCAGATCAACGTGGAGGTGCCAGCTTTCCTGCAACGGCTGGTGGACCAGGACAATAAGAAGTTTGAAGAGTGGTGCAGCGAGATGGCCGACATGAGGAAGCAGAGTGTGGACAAGGGAAAAGCCAAACATGTGGAGGTCAAGGAGCTCTATGAGCTGCTGCCTGCACAAGACGGTGAGCCTTATGAGTTTGTGCCTGTGGAGTGGCTAAAGGAATGGCTGGATGACTCGACGGCCATCAAGGCGATCGACAACAGCAGCTTTCTGTGCTCGCACGGCAAACTGCACCCGGATCGTGTTGGCGATGCCAAGCGCATATCTCACACAGCTGCAGAGATCCTTTACGGTCGCTACGGTGGAGGACCCAGAATAGACCGATCCTTTCTGTGTGGAGACTGTGTCACTCAACGATGTCATGTACTCCGACTTAAAAATCAGCTTAATGAGGACTACAGAGAAGTGACCAACCTCGCCAAAGCACAGCTGAAAAGTGGTGATCCAGGATTTTGGGTAGGGAAGGCATCTCTGAGGCAGTGGCGGCAGCTTGCACTGGAACAgctggaggaagaagaagaggagaccAAACACACCAACTGCAAAaccaatggagaaaaaacatcaAGCACAAGTTCGAAAGATAGTGTAAAAGAGAATGATGGAGACACTGATGAAATGAAGAGTTTTAATGAAGACATTCTTTGCTGTCATGGTGGTCTGAGTATTCAGGAGACCGAGAGACGGCTGGTCTCGGCCGAGGTGTGGAGCAAACTAAAGGTTTATTTCCCCAAAGCACCAGAATTCACACAACAACAGGACTCCTGCCAGCAGTGCATGagACTGGAGCGAGAAGGTAAGGAGAATGAGGCTCTGAACCGAATGATGGCCAGTGAACAGAAAAGCTCTCTGCTCAACCTCTTCCAGGAGAAAAATCGCCCCACGCTGCAAAAATGGCCACAGgataCAGATATTCTGTACATCGTTCCTCTCTTCTTTGTTGATGAGTGGAGGAAATTTATCAGGAGGCCGGCAAAGTCCAATCCAGTGTCCAGTGTGGGGAACAGCATCCTGCTGTGTCCTCATGGAGGCTTCATGTTCACCTATGACTCCATGCTTCAGGGAGACGCCCAGCATATAGCTCTCCTCTGGCCTGCCGAGTGGGAGGTGGTCTGCAGGCTGTTCCTGGTGGATCAGACTATCTCCATATGCAGGATTTGTGACCCGACGCAGGACAATGGGAACGTACAGTACCACACCCAACCTGAGCTGTGTCGAGAATGTCGCGAGGGCTTCATATTCCAGCAACAGAGGGATTTGCGGGAGTACGCACAGGCCACTGTGTATGTGCGTAAGGTCATCGACAACAAGAGGATGATTAAAGAGGCTCCCCCTGAGTTCAGTATGAGCGGATCTGAGGCCGAGGATGAGAAAGAAGAGCCAAAAGTGGAAGGAGAGAAGGATCCAGACTTTAACCAGTCTCAGGATGGGGCAAAGAGGCAGAAGCTGAGTGAGGGATGTTCTGCTGTGGCGCTTCCCTCTGGTCCTCCccctactgctactgctactgctactgttTCTATGGCAAAATCGAGCATCCGCAGGAGCATGCGCCACAGGAAGCTGCGTGGAGAAAAAGCGCTGATCGTTTCTGCCAACCAGACTCTGAAGGAACTCAAAATCCAAATCATGCATGCCTTCTCTGTGGCGCCGTTTGACCAAAACCTGTCTATAGATGGGCGGTGTTTAACTGATGACTCCGCCACACTAGGAAGCTTAGGGGTGTTTCCAGAAAGCATCATATGTCTAAAGgcTGATGAACCTATAGCAGATTACGCAGCGATGGATGATGCATATCAagTTTGTTTGCCTGAAGAAGGATTTAAAGGTACCGGGCTACTAGGGCACTGATGGGGGTCAACAATGACAACATCTGTGTGAAGAAAATTTcatttaggtttagatttgttttgttttatttagtttttgtctctctttattgttattttttgccTCGTAACTTAATGTTGCAGCTCCTTTAAAGAGTGTCTGTCTTtgcatttgaaataaaatgtgtttgatggTTTTTAATATTCCGAGATGTTGATGCATTCTGTAAGTGCATATACCATGACTGTGAACAGATACGGGTCGAGACTTGAACTGATCTTTTGCGTCTTTTAAGTCCTTCTTTCGGTGGCGATGTCCTGTTCCCGAGACGACGGCTTGGTGTTTAGGTGCCCATCATGTTTCATTTGCTGGACAAAAAAGCATTTCTGTAAAAGTTTCATTTTAACAGAGTCACATGGTTACACACTGCACTCACGATcagatatacatataataaGAATGCATGAGCAACTTCAATATTAAACTGTAAGCCTATGCTGAgctgtaataaaacatttaccaaaaataatatttaactgACGTGAAAGCGATGAAAGGAGACAATAAGGCTGAATATTATGATACATTTCAAAACAGGAAAATAACATATACAAACAACATAATCCATAAAACCTGCAGATAGTTTAGATCTGTTCTGCTAGTACTTGAAATGTTATGCGGGCATCTGTGTGAACTGTTCTTCTTTCTGTAATCTTTCATATGGGcaataaagttactttttccACATGCTTACAGTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256429 lncRNA upstream 3073 12526268 ~ 12526620 (+) True G189182
TU256423 lncRNA upstream 5779 12523007 ~ 12523914 (+) True G189180
TU256421 lncRNA upstream 7483 12521485 ~ 12522210 (+) True G189179
TU256420 lncRNA upstream 10263 12518864 ~ 12519430 (+) True G189178
TU256413 lncRNA upstream 23781 12505356 ~ 12505912 (+) True G189175
TU256435 lncRNA downstream 19121 12565573 ~ 12566136 (+) True G189185
TU256439 lncRNA downstream 47031 12593483 ~ 12597991 (+) True G189186
TU256486 lncRNA downstream 222692 12769144 ~ 12769538 (+) True G189228
TU256474 lncRNA downstream 223129 12769581 ~ 12770649 (+) True G189216
TU256481 lncRNA downstream 270735 12817187 ~ 12819525 (+) False LOC111195379
XM_022682385.1 mRNA upstream 25401 12488762 ~ 12504292 (+) True LOC103039330
XM_007256426.2 mRNA upstream 279256 12245469 ~ 12250437 (+) True LOC103043660
XM_007256424.3 mRNA upstream 303213 12210745 ~ 12226480 (+) True LOC103043048
XM_015607644.2 mRNA upstream 303213 12219996 ~ 12226480 (+) False LOC103043048
XM_022682376.1 mRNA upstream 538343 11690872 ~ 11991350 (+) False fam19a1
XM_022682388.1 mRNA downstream 1198 12547650 ~ 12565023 (+) True zbtb40
XM_022682390.1 mRNA downstream 1198 12547650 ~ 12565023 (+) False zbtb40
XM_022682389.1 mRNA downstream 1198 12547650 ~ 12565023 (+) False zbtb40
XM_007254542.3 mRNA downstream 68468 12614920 ~ 12622920 (+) True psma5
XM_022682393.1 mRNA downstream 77718 12624170 ~ 12655103 (+) True sort1
TU256360 other upstream 88960 12439603 ~ 12440733 (+) True G189141
TU256257 other upstream 293601 12233201 ~ 12236092 (+) False G189073
TU256169 other upstream 529040 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other upstream 722598 11806708 ~ 11807095 (+) True LOC111195378
TU256132 other upstream 1065213 11451379 ~ 11464480 (+) True G188968
TU256538 other downstream 449220 12995672 ~ 12996904 (+) True G189268
XR_002651609.1 other downstream 868617 13415069 ~ 13427065 (+) False LOC103033837
TU257060 other downstream 1560850 14107302 ~ 14108108 (+) True G189621
TU257621 other downstream 2816240 15362692 ~ 15365000 (+) True G190050
TU257667 other downstream 3164499 15710951 ~ 15721041 (+) True map1lc3a

Expression Profile