RNA id: TU256413


Basic Information

Item Value
RNA id TU256413
length 557
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G189175
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12505356 ~ 12505912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggagggcaTTTGGCACTTTTAGACACAGATGGCTGTGGTATCAACAGAATATTCCCAACAGTCTGATTATTCAGGTATTTAGGTAGATCTGATTAAGGCCTAGAAATCCAGCTGAATTTTAGAATATTAATCAGACTTCTCAGCATAATGTTGGCTGGTTAAAATCTGAGTATTGACCTGCTCAAGTAAAAGCATTTTCTGATTACCCAAGTGCATGTAGATGCACTAAATAGATTTCTGAACAAATCCATTAAATCCCAGAAATTCTGCAGATATCGGATTATGTGCATGTAAACATGTTAATCTGATTATTGACAAGATCTGATTTGCTAGTTATCAGATTAAGTGATAGTAAATGCTGTCTCACTCacaagccttttttatttttaaataaccaGTTTTCCAGCCTCTATCCATCATGTACATTTAGACAGGTAAGACAGTATTCTCCATAGACATTGGTGATTTATCCCAGAACTAAGCTATATCTAAAGCTCCGGaaaaaatagaccacttcagtttctaaatcagtttctctgattttgctatttataggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256339 lncRNA upstream 94394 12408974 ~ 12410962 (+) True G189122
TU256330 lncRNA upstream 108250 12396550 ~ 12397106 (+) True G189115
TU256311 lncRNA upstream 159584 12335535 ~ 12345772 (+) True G189101
TU256312 lncRNA upstream 159584 12335535 ~ 12345772 (+) False G189101
TU256318 lncRNA upstream 176897 12327614 ~ 12328459 (+) False G189104
TU256420 lncRNA downstream 12952 12518864 ~ 12519430 (+) True G189178
TU256421 lncRNA downstream 15573 12521485 ~ 12522210 (+) True G189179
TU256423 lncRNA downstream 17095 12523007 ~ 12523914 (+) True G189180
TU256429 lncRNA downstream 20356 12526268 ~ 12526620 (+) True G189182
TU256435 lncRNA downstream 59661 12565573 ~ 12566136 (+) True G189185
XM_022682385.1 mRNA upstream 1064 12488762 ~ 12504292 (+) True LOC103039330
XM_007256426.2 mRNA upstream 254919 12245469 ~ 12250437 (+) True LOC103043660
XM_007256424.3 mRNA upstream 278876 12210745 ~ 12226480 (+) True LOC103043048
XM_015607644.2 mRNA upstream 278876 12219996 ~ 12226480 (+) False LOC103043048
XM_022682377.1 mRNA upstream 504693 11690872 ~ 12000663 (+) False fam19a1
XM_015607192.2 mRNA downstream 23127 12529039 ~ 12546452 (+) False usp48
XM_007254538.3 mRNA downstream 23209 12529121 ~ 12546452 (+) True usp48
XM_022682386.1 mRNA downstream 23483 12529395 ~ 12546452 (+) False usp48
XM_007254539.3 mRNA downstream 23781 12529693 ~ 12546452 (+) False usp48
XM_022682387.1 mRNA downstream 24635 12530547 ~ 12540827 (+) False usp48
TU256360 other upstream 64623 12439603 ~ 12440733 (+) True G189141
TU256257 other upstream 269264 12233201 ~ 12236092 (+) False G189073
TU256169 other upstream 504703 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other upstream 698261 11806708 ~ 11807095 (+) True LOC111195378
TU256132 other upstream 1040876 11451379 ~ 11464480 (+) True G188968
XR_002651607.1 other downstream 24635 12530547 ~ 12545101 (+) False usp48
TU256538 other downstream 489760 12995672 ~ 12996904 (+) True G189268
XR_002651609.1 other downstream 909157 13415069 ~ 13427065 (+) False LOC103033837
TU257060 other downstream 1601390 14107302 ~ 14108108 (+) True G189621
TU257621 other downstream 2856780 15362692 ~ 15365000 (+) True G190050

Expression Profile