RNA id: TU256132


Basic Information

Item Value
RNA id TU256132
length 429
RNA type TUCP
GC content 0.53
exon number 5
gene id G188968
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11451379 ~ 11464480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGGAACAGATCATAGAGCTTCTTAATCTGATCtgcagcCTGAGTCTCCAGCGGCCCTTTGAAGCCCAAATTAGCTGCCATGCGCCGAGCCTGGTCGTCTCGAACACCTTCGAAAATATCTATGGGTTCCTTGAATATGAGCTCTGGTGTTTTGGCTGCTACCTCCTCTATGTCCACTCCACCCTGCGGACTGCCCACCATAACAGGCCCGTTACACGCCCGGTCCATCAGGATAGCAAAGTATGTTTCTCTGGAGATGTCCAAAGCCTCCGCCACCATCACCGTTTTTACTTTCACGCCGTCCTTAGGGGTCTGCTTGGTGGTCAGGTTGAAGCCGAGCATCTTGCCAGCCAAATCGCCCACCACTGCAGGGTCTTTGGTTAAGTGCACACCTCCTTTCAGGCCGCTGTCAAAGACTCCTTTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256125 lncRNA upstream 27044 11369410 ~ 11424335 (+) True G188964
TU256127 lncRNA upstream 65848 11369410 ~ 11385531 (+) False G188964
TU256126 lncRNA upstream 78415 11369410 ~ 11372964 (+) False G188964
TU256123 lncRNA upstream 79730 11346874 ~ 11371649 (+) True G188963
TU256114 lncRNA upstream 128347 11296605 ~ 11323032 (+) True G188956
TU256167 lncRNA downstream 118985 11583465 ~ 11583879 (+) True G188999
TU256194 lncRNA downstream 579663 12044143 ~ 12044418 (+) True G189025
TU256253 lncRNA downstream 736939 12201419 ~ 12205983 (+) True G189071
TU256256 lncRNA downstream 766307 12230787 ~ 12236092 (+) True G189073
TU256260 lncRNA downstream 766307 12230787 ~ 12233436 (+) False G189073
XM_022682373.1 mRNA upstream 148133 11273437 ~ 11303246 (+) True LOC103022498
XM_022682372.1 mRNA upstream 185019 11257158 ~ 11266360 (+) True kbtbd8
XM_022682370.1 mRNA upstream 381024 10997339 ~ 11070355 (+) True slc25a26
XM_022682368.1 mRNA upstream 487570 10475939 ~ 10963809 (+) True LOC103026179
XM_022682857.1 mRNA downstream 94902 11559382 ~ 11562194 (+) True LOC111195454
XM_022682375.1 mRNA downstream 226392 11690872 ~ 12000663 (+) True fam19a1
XM_022682377.1 mRNA downstream 226392 11690872 ~ 12000663 (+) False fam19a1
XM_022682376.1 mRNA downstream 226392 11690872 ~ 11991350 (+) False fam19a1
XM_007256424.3 mRNA downstream 746265 12210745 ~ 12226480 (+) True LOC103043048
TU256068 other upstream 361332 11089728 ~ 11090047 (+) True G188923
TU255903 other upstream 598643 10848071 ~ 10852736 (+) True G188771
TU255727 other upstream 1147714 10303360 ~ 10303665 (+) True G188624
XR_002651604.1 other upstream 1230249 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 1236431 10214359 ~ 10214948 (+) True LOC111195374
TU256169 other downstream 226406 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other downstream 342228 11806708 ~ 11807095 (+) True LOC111195378
TU256257 other downstream 768721 12233201 ~ 12236092 (+) False G189073
TU256360 other downstream 975123 12439603 ~ 12440733 (+) True G189141
XR_002651607.1 other downstream 1066067 12530547 ~ 12545101 (+) False usp48

Expression Profile