RNA id: XR_002651603.1


Basic Information

Item Value
RNA id XR_002651603.1
length 160
RNA type ncRNA
GC content 0.46
exon number 2
gene id LOC111195374
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10214359 ~ 10214948 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCAGGGAGAGAGAagtacaagctgtgtgtgtctgttcctCCATGTTTTACCCCCTTTGTGTGCGAAGTATGCGTCCTTGACTTGAAACCATACTTTTCATACTTTACAAGCTCTGTATTCCACTAAGCCTGTGTGCAAGTAAAGTGCTGCTGTGTAAC

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255560 lncRNA upstream 56903 10091209 ~ 10157456 (+) True G188478
TU255422 lncRNA upstream 147936 10065738 ~ 10066423 (+) True G188366
TU255412 lncRNA upstream 243066 9964529 ~ 9971293 (+) True G188358
TU255411 lncRNA upstream 247884 9964529 ~ 9966475 (+) False G188358
TU255408 lncRNA upstream 257770 9953600 ~ 9956589 (+) True G188356
TU255614 lncRNA downstream 13549 10228497 ~ 10229131 (+) True G188527
TU255725 lncRNA downstream 86220 10301168 ~ 10301380 (+) True G188622
TU255726 lncRNA downstream 87497 10302445 ~ 10302703 (+) True G188623
TU255745 lncRNA downstream 92438 10307386 ~ 10311022 (+) True G188632
TU255744 lncRNA downstream 93371 10308319 ~ 10311022 (+) False G188632
XM_007240551.3 mRNA upstream 81650 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 81650 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 82510 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 107829 10101755 ~ 10106530 (+) True LOC111195371
XM_007243192.3 mRNA upstream 173218 10023992 ~ 10041141 (+) True dhrs3
XM_022682368.1 mRNA downstream 260991 10475939 ~ 10963809 (+) True LOC103026179
XM_022682367.1 mRNA downstream 260991 10475939 ~ 10963809 (+) False LOC103026179
XM_022682369.1 mRNA downstream 523106 10738054 ~ 10739675 (+) True LOC103041410
XM_022682366.1 mRNA downstream 566721 10781669 ~ 10963809 (+) False LOC103026179
XM_022682370.1 mRNA downstream 782391 10997339 ~ 11070355 (+) True slc25a26
XR_002651602.1 other upstream 33757 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 108059 10104616 ~ 10106300 (+) False LOC111195371
TU255362 other upstream 357364 9854307 ~ 9856995 (+) True G188325
XR_002651599.1 other upstream 1942670 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 2101117 8112490 ~ 8113242 (+) False LOC111195452
XR_002651604.1 other downstream 5594 10220542 ~ 10221130 (+) True LOC111195375
TU255727 other downstream 88412 10303360 ~ 10303665 (+) True G188624
TU255903 other downstream 633123 10848071 ~ 10852736 (+) True G188771
TU256068 other downstream 874780 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 1236431 11451379 ~ 11464480 (+) True G188968

Expression Profile