RNA id: TU255412


Basic Information

Item Value
RNA id TU255412
length 366
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G188358
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9964529 ~ 9971293 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCAGGAGTTCTTTGGAAAACTGAGTGGCACAAAGCGAGGGAGCCAGCAGCCGTGAAGAAAGGAGACAGGAAAGGAAAAAGCAGGATGGAGAGGGGCAGAAGATTCCGTATTCTACTCTCtgatagaagaaaaaaaggaaaaggacaagaagaagaagatcaagaagaacaaaaaataaagcattttaccTAAAAGAAACGTATAatcaataatttaaataaataaataagtttaatgTTATGTATTGTTGGTGGTATGTACTTACAGAATAAGAACTGtagaacactgcacactacataatacagccactctctgttgtttctgagtaagtACTGTATACTTACAGAGTAAGTACTGtagaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255408 lncRNA upstream 7940 9953600 ~ 9956589 (+) True G188356
TU255404 lncRNA upstream 8708 9952648 ~ 9955821 (+) True G188355
TU255350 lncRNA upstream 134353 9829959 ~ 9830176 (+) True G188316
TU255266 lncRNA upstream 169313 9764949 ~ 9795216 (+) True LOC103032765
XR_002651600.1 lncRNA upstream 209918 9752731 ~ 9754611 (+) True LOC111195368
TU255422 lncRNA downstream 94445 10065738 ~ 10066423 (+) True G188366
TU255560 lncRNA downstream 119916 10091209 ~ 10157456 (+) True G188478
TU255614 lncRNA downstream 257204 10228497 ~ 10229131 (+) True G188527
TU255725 lncRNA downstream 329875 10301168 ~ 10301380 (+) True G188622
TU255726 lncRNA downstream 331152 10302445 ~ 10302703 (+) True G188623
XM_007230592.3 mRNA upstream 125207 9836099 ~ 9839322 (+) True klhdc7a
XM_007230591.3 mRNA upstream 144574 9283795 ~ 9819955 (+) False LOC103032765
XM_015607518.2 mRNA upstream 144574 9283795 ~ 9819955 (+) False LOC103032765
XM_022682354.1 mRNA upstream 1231404 8446783 ~ 8733125 (+) False LOC103024232
XM_007243192.3 mRNA downstream 52699 10023992 ~ 10041141 (+) True dhrs3
XM_015604311.2 mRNA downstream 62718 10034011 ~ 10041141 (+) False dhrs3
XM_022682361.1 mRNA downstream 130462 10101755 ~ 10106530 (+) True LOC111195371
XM_007240551.3 mRNA downstream 148740 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA downstream 156902 10128195 ~ 10132709 (+) True LOC103039471
TU255362 other upstream 107534 9854307 ~ 9856995 (+) True G188325
XR_002651599.1 other upstream 1692840 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 1851287 8112490 ~ 8113242 (+) False LOC111195452
trnaq-uug_4 other upstream 2772303 7192154 ~ 7192226 (+) True trnaq-uug_4
TU254736 other upstream 2865860 7092765 ~ 7098669 (+) False LOC103029365
TU255566 other downstream 133323 10104616 ~ 10106300 (+) False LOC111195371
XR_002651602.1 other downstream 205837 10177130 ~ 10180602 (+) True LOC111195373
XR_002651603.1 other downstream 243066 10214359 ~ 10214948 (+) True LOC111195374
XR_002651604.1 other downstream 249249 10220542 ~ 10221130 (+) True LOC111195375
TU255727 other downstream 332067 10303360 ~ 10303665 (+) True G188624

Expression Profile