RNA id: TU255350


Basic Information

Item Value
RNA id TU255350
length 218
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G188316
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9829959 ~ 9830176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataagcagaggttacactagctgttgcatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaagagacgatgctctgtccagctatatacagtctatg

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255266 lncRNA upstream 34743 9764949 ~ 9795216 (+) True LOC103032765
XR_002651600.1 lncRNA upstream 75348 9752731 ~ 9754611 (+) True LOC111195368
TU255297 lncRNA upstream 75359 9752930 ~ 9754600 (+) False LOC111195368
TU255251 lncRNA upstream 656299 9173390 ~ 9173660 (+) True G188222
TU255250 lncRNA upstream 693341 9136270 ~ 9136618 (+) True G188221
TU255391 lncRNA downstream 88753 9918929 ~ 9981569 (+) True G188349
TU255404 lncRNA downstream 122472 9952648 ~ 9955821 (+) True G188355
TU255408 lncRNA downstream 123424 9953600 ~ 9956589 (+) True G188356
TU255411 lncRNA downstream 134353 9964529 ~ 9966475 (+) False G188358
TU255412 lncRNA downstream 134353 9964529 ~ 9971293 (+) True G188358
XM_007230591.3 mRNA upstream 10004 9283795 ~ 9819955 (+) False LOC103032765
XM_015607518.2 mRNA upstream 10004 9283795 ~ 9819955 (+) False LOC103032765
XM_022682353.1 mRNA upstream 1096834 8438713 ~ 8733125 (+) True LOC103024232
XM_022682351.1 mRNA upstream 1096834 8446783 ~ 8733125 (+) False LOC103024232
XM_022682354.1 mRNA upstream 1096834 8446783 ~ 8733125 (+) False LOC103024232
XM_007230592.3 mRNA downstream 5923 9836099 ~ 9839322 (+) True klhdc7a
XM_007243192.3 mRNA downstream 193816 10023992 ~ 10041141 (+) True dhrs3
XM_015604311.2 mRNA downstream 203835 10034011 ~ 10041141 (+) False dhrs3
XM_022682361.1 mRNA downstream 271579 10101755 ~ 10106530 (+) True LOC111195371
XM_007240551.3 mRNA downstream 289857 10120033 ~ 10132709 (+) False LOC103039471
XR_002651599.1 other upstream 1558270 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 1716717 8112490 ~ 8113242 (+) False LOC111195452
trnaq-uug_4 other upstream 2637733 7192154 ~ 7192226 (+) True trnaq-uug_4
TU254736 other upstream 2731290 7092765 ~ 7098669 (+) False LOC103029365
XR_002651591.1 other upstream 3682440 6146685 ~ 6147519 (+) True LOC111195362
TU255362 other downstream 24131 9854307 ~ 9856995 (+) True G188325
TU255566 other downstream 274440 10104616 ~ 10106300 (+) False LOC111195371
XR_002651602.1 other downstream 346954 10177130 ~ 10180602 (+) True LOC111195373
XR_002651603.1 other downstream 384183 10214359 ~ 10214948 (+) True LOC111195374
XR_002651604.1 other downstream 390366 10220542 ~ 10221130 (+) True LOC111195375

Expression Profile