RNA id: TU254736


Basic Information

Item Value
RNA id TU254736
length 1681
RNA type TUCP
GC content 0.48
exon number 2
gene id LOC103029365
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7077165 ~ 7098672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTACAGAACTGCAAGCAGGGGAAGGCTTTTCACCCCTCCAAAACAACTGGTATTCATTTATTGTTCTCCCCCTCAGGGCCTCGGGTGGGCGGTTCCCTCCAAAGCTCAGAGCTCCAGAGGGAAGCTGGGACAGGGAGCCAGGGGTGCGTCCCCCAGCAACCTGAAGGTGAAGGAGGAGATGGGGTGAGGGTGGGCAACAAATGCTTGGAACTGGAGGATCATgccaaagagaaagaaagagagGGGGATACAGAAACTCACGACGACTACCAGACAGCAACAGACCCACAGTCACACGTCTCCCAGCCTGTGACTAATGCCTGTCACATCAGTACATCATCAGTGGCGGAGCTTGTCACGCCTAGCGTTTCAGGCAGCGCTACACCAGCTCTCTCTGGAGCAACTAGCCTTTCACAGGACTCCACACATGTTGGTCAAAGGGCGTACTCTCTTCTTGACAACTCACAACATGTTAAACAGAGCGCCTGTTCAAAAACTCCACAACTAATTGGCCAGAGTGAGGCAAACAAGACAGGAAGAGCTCCACTTCCATGTCAGGAGAGGTTTACGTTATTATCCACAGGGCACAGCGCTCCAAGCGATGAGAGACATCTACCACCAACATGTGGACACCTCTTGGCTCACCCTCTCTTGGTAAATGCCATTCAGAAAGAAGTCCAGAAAGAGACACAGATAAAAACCAACGCTACTGCAACTCTACACGCGAATCACACAAGGGCCTTACAAGAGCATATGTCATTTtcagaagaaaacaaaagaaatgaacCACAGACTGTTCCAACATTATCGCCTTGTGACGCCGAAGCCAATCAAACAGTAAACATCATCCCAACAGACAAAATCCATACCACATGTCCCAATCAATCCAACAACAGTAACACCATGCTCTCTAATCCAACATATGCATCCCCCGCACATGACCATGCTCCTACAGAGCCTAATGCACCACAGTGCCATTCGGGTGGCAGCTACTTGGAAGAAGAGGAAAGCTCCAGCAGCAGTGATGATGAGGGAAAACTAGTCATTGCGCTTGTTGAGTAAAACCACCCACAGATGCCAATACCCATGAAAAGTCTTGCTTCGCTAACGTGCCTTTGACTGTACTGTTGTCGTTCCTCGTGCACTAAAATGACTCTCTGAAAGTCCTCACGCTATCACTCACTCACAAATGCACCTGCAGAATGATTCACGGCACTCCGAACACCTTAAGGTGCTTCACCCACACACCGCACCTGAGTGGATGTGGTGTACAGCAGTAGCCACACAGGAATGCATTAAGCACCAGTGTGTGATTAAGACTTACTCAACCGCAGAAACAGGAAATAAGTGTGTACAACTGCATTCCCACAGACACTGGCGTCCCACAGGGATCAATCATGGGAACATTAAGGATGGCAGGAATGTAAAGATTCAGCAGACAAGCACCTTCTGGCAACGATACTGAAAACACATTTACTCATCACTCATCGCTGTCTCTCTTAACTGTCACCTGCTTTATCTAACAGCTGCTGTTGAATCATAATCAGTTACAAATGaatgtcttttaaaaagtgtcttCGCTGATAATTGGACCAACACGGATCTGTGCTTTTACAGTGTTACTTAACTCATTCGGCTCCCATCTGTTGCTGATTAAAATGCACACTGTTCTACCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254705 lncRNA upstream 42427 7033140 ~ 7050338 (+) True G187810
TU254602 lncRNA upstream 110011 6978863 ~ 6982754 (+) True G187743
TU254591 lncRNA upstream 194022 6888272 ~ 6898743 (+) False G187733
TU254590 lncRNA upstream 194022 6893575 ~ 6898743 (+) True G187733
TU254586 lncRNA upstream 205194 6886310 ~ 6887571 (+) False G187731
TU254756 lncRNA downstream 65825 7164494 ~ 7164767 (+) True G187844
TU254757 lncRNA downstream 71745 7170414 ~ 7170650 (+) True G187845
TU254760 lncRNA downstream 90363 7189032 ~ 7189926 (+) True G187848
TU254762 lncRNA downstream 91388 7190057 ~ 7193359 (+) True G187850
TU254827 lncRNA downstream 226016 7324685 ~ 7325351 (+) True G187900
XM_007251392.3 mRNA upstream 90753 6990940 ~ 7002012 (+) True LOC103039610
XM_007251394.3 mRNA upstream 90753 6990954 ~ 7002012 (+) False LOC103039610
XM_007251396.3 mRNA upstream 104801 6983613 ~ 6987964 (+) True LOC103040557
XM_007251399.3 mRNA upstream 209350 6852509 ~ 6883415 (+) False LOC103041362
XM_022682311.1 mRNA upstream 209350 6853547 ~ 6883415 (+) True LOC103041362
XM_007251388.3 mRNA downstream 29496 7128165 ~ 7139038 (+) True LOC103038368
XM_007251386.2 mRNA downstream 108649 7207318 ~ 7210200 (+) True LOC103037733
XM_007251383.3 mRNA downstream 248274 7346943 ~ 7353286 (+) True acot8
XM_007251384.3 mRNA downstream 255566 7354235 ~ 7360534 (+) True LOC103037081
XM_007251379.2 mRNA downstream 263894 7362563 ~ 7375037 (+) True ift52
XR_002651591.1 other upstream 945246 6146685 ~ 6147519 (+) True LOC111195362
trnae-cuc_2 other upstream 2302718 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 3169103 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 3697922 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 4090750 2980497 ~ 3002015 (+) True G186880
trnaq-uug_4 other downstream 93485 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 1013821 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 1158129 8256798 ~ 8271689 (+) False agtrap
TU255362 other downstream 2755638 9854307 ~ 9856995 (+) True G188325
TU255566 other downstream 3005947 10104616 ~ 10106300 (+) False LOC111195371

Expression Profile