G187900


Basic Information

Item Value
gene id G187900
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7324685 ~ 7325351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254827
tctaaccagcacagcaccatccacctGTTATCAAACctcagaacctactaatctaaccagcacagcgccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacatactaatctaaccagcacagcaccatctatctgttatcaaacaccagaacctactaatctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254827 True 209 lncRNA 0.44 2 7324685 7325351

Neighbor

gene id symbol gene type direction distance location
LOC103037733 LOC108438636 coding upstream 114485 7207318 ~ 7210200 (+)
LOC103038368 NA coding upstream 185647 7128165 ~ 7139038 (+)
LOC103039610 NA coding upstream 322673 6990940 ~ 7002012 (+)
LOC103040557 yod1 coding upstream 336721 6983613 ~ 6987964 (+)
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding upstream 441270 6852509 ~ 6883415 (+)
acot8 acot8,LOC107730625,LOC107670930,LOC107722006 coding downstream 21592 7346943 ~ 7353286 (+)
LOC103037081 srsf6,LOC107654800 coding downstream 28884 7354235 ~ 7360534 (+)
ift52 ift52 coding downstream 37212 7362563 ~ 7375037 (+)
mybl2 mybl2 coding downstream 54406 7379757 ~ 7393057 (+)
rpn2 rpn2 coding downstream 70574 7395925 ~ 7409747 (+)
G187850 NA non-coding upstream 131326 7190057 ~ 7193359 (+)
G187848 NA non-coding upstream 134759 7189032 ~ 7189926 (+)
G187845 NA non-coding upstream 154035 7170414 ~ 7170650 (+)
G187844 NA non-coding upstream 159918 7164494 ~ 7164767 (+)
G187810 sh2d5 non-coding upstream 274347 7033140 ~ 7050338 (+)
G187904 NA non-coding downstream 51800 7377151 ~ 7378588 (+)
G188009 NA non-coding downstream 675483 8000834 ~ 8001377 (+)
G188051 NA non-coding downstream 724287 8049638 ~ 8050112 (+)
G188062 NA non-coding downstream 794979 8120330 ~ 8120628 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding downstream 796393 8121744 ~ 8139505 (+)
trnaq-uug_4 NA other upstream 132459 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 226013 7077165 ~ 7098672 (+)
p3h1 NA other upstream 1525706 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 3929842 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 4322670 2980497 ~ 3002015 (+)
LOC111195452 NA other downstream 786652 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 931445 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 1958444 9283795 ~ 9819955 (+)
G188325 NA other downstream 2528956 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 2776404 10101755 ~ 10106530 (+)

Expression


Co-expression Network