LOC103038368


Basic Information

Item Value
gene id LOC103038368
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7128165 ~ 7139038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251388.3
attcgtccaactaagcttttttaatatattttcattgtACTAAAACGCATTCATTTTCAATaggcttttgtccttaatggcttaattacttttaattgtataatttaagtttaaaaccagtacttttacacttttacttaagtaaaaagcttgagaagtatttttaaaccctaCTATTTATACTTCTTCCTGAgtaattaatgtgaatatttttttttacacctttgcCTAATGACGTTGCACCTACTTTTTGATACGTTACACCACATAGTCCAAATGTACCCCTGCCCCACACATTTTATAGCACTAATACCCTACACCTGAATAGACTCCCCACTTCAGGACAAGTCATTCATGGATTTAAAGTGGGCTGGGGCAGAGCAAAGGCAGAACTGGACACCACTGCCCTTTTTTGCCTGGAGCTAATTAGCATCCCAGTGGTCTCAGTGGCTGAGGAGCTGTAGTCTGGAAGGGTGGTGCTCGGAGCGCTCTACAGCTATAAAGCCCCATTTGCTGCTTAGAGACAGCagcactcatacacacatacacacactcacatacctatacacacacactgaaactcACTGACTCTCAGCAGCCCCTGCTGCAGGATGTTATCACATGTATCTCCACACCTTTCCACAGCAGACCTGACAGCTCCGTGATAAATGCGCTTTTTCTGGCTGGGATTATGAAGAGCACACATGAGAAAAATGACACTTTTTCGTGACTTTCGACTCTTTGATCACTCTGGCACAACCCTGGAATTAATCTAAACGATATCTCTGCGATTCCCTTCTACTTTTGCTTCTTCAGCCGGACACGTTGTGTTGGATTAAGAGTGGGATGGCCAAGGCATCCTGGATTAATTTGGGCGTTTTGCTTTTAATTGGATTCACAGCTGCAAACGCCAACGGTTTCCCGCAGCCTTCTGAAGAGACTCTCAAGCAGAACGCCACCGCGCAGGCGCAGTCCGCCAGTGCCGCGAGCGCAGCGGTTTCGTTGCACGCGGCGGCGCGCGGGCGCAGAACGCGGAGATGCACGTGCTATACGTACAAGGACAAGGAGTGTGTTTACTACTGCCACCTCGACATTATCTGGATCAACACCCCAGAGCGCACCGTCCCGTACGGCATGTCGAGTTACAGGGGCTCACAGCGAGCGCGGCGCTCCGTGGCAGACTGGAATGAGGCTCACcgctgtgtgtgtgctctgcagAGCGACTCGGCATGCAGCAGCTTCTGCAGCGCGAGGGGAAGGTCACCATGACCTTCAGTTCCAGAAACGCTAATCCATACTGGAAATGTCTCAACCATGCATTCTTCTGTCCTAACACCTGGAGACTCACCTCAAGGGAATGGCTTACCTCTGTCTGAGAAGGAGGAATTCCATAATTCAAAGGAGACATGAGAGGGAAGAGGAAAGGAACAGTGGATTTTCTAAGGAAGGCTCACACTATCGAGAAGCAGGATTTGATAGTAAATAATCATAGAGCGACCAACTTTAAGCTAACTCATCTCATTAGGGCCTCTCTTCTGGACCTTCGTGGCAACCTAAGCTAATGTTCCATCTCTGCACACAACAGAGGACCTTCCAGATTCTCATGACTAACAACGGATCGGTTTACAATTCTTTTGAAGCAGTTATCTGTCTGTGCTTAGTCTCCTTTACTACAGATACGTGTGTGACTAACATTTGCTATGATTGGACTTCCAAATGCAGCGTGCATGGCAGGTTTGGTTACTGAGCCTCAAAGGCAACCTGAGATTTTCAGTGAGATAGACGGTTTCATACCGCACTCTCCGAGATGACAGTTCTTATAATGCATCTGATTAGACGGCACTTACAGTACGTATGGACTCACAAGCAGAGGCTTGTACATAAAGTAACACCTTTCAAGCTGTCAGTAGACCAGTTTCATTCTATGTAACTGTGAAAAACTTATTGCAACTGTAATTATGCTGTTTCATAATATAAGTACAcgcaatattttttaaatatgttgtaaaTATGGTTGTTGACTCAGTTACAGTATATTgcgtttgttcatttgtttaacacttaattTCATAGTCGTATATAGTCCTATTTTGTGTTGACACACCTCTTTTgtactaaaaaaatacatttctgatCACTAACTTGGTCCATCAGCTCATTTTGCTTCTTAAAGGATTCTTAAAGACAAAAGGAAGACCTCctagctttgtttgtttggtcATAAAGGGGTTCTAAAGCATTATGTTAACATTCATTGTGCACATACATACACTGTTTTACACAATTGAAAAGATTATTTCAGATTTATTGTAAATGAGATAccaggttttaaaaaaaatgcttatcaGCCATTGGATTCCTGATTTTAAAGGGTACAGAATTCTACAATTAATGGTCAGTGTTTTGGGGTGACCATTCCTGCAAcatctaatatattaattaaaaatagtgAAAAAGAGTGGTCCGGTATGCGCTCTTTGCGCTCTATGTTTCTACTGTATTtcataaatgaaaaatattaagataatattatatttaaaaacacagtacacTTCCACATGCTTTGTGAAGTCTCCAATCCCCAAAATCTAtaaactgtcattttaaaagGGCActaaccccctgatttttgctgactccaccctcagctcaaatttaaaaatgggaaaaatgggTTTAGAAGCAGAGCAGgtggagggagagctgattggttgcgctgcagcagcagcagcagcagtgtgcctgaTATTGGTGAGACGCAGATTGTTGTAAGtcattattgattgactgatctgcaaaccaaagtacacagacacatcatccACACCTATGGCACAGTTGAACCTGCAGAGGagattaccacaataaaagtgttttttaaaggttaagaaAAGTACTTCTAATGATTCTAATTGCCTAGCCTATTTTTTAGCATGGTTCTGGAATTGAAAGTAAATTTCTGTATGGCACACTACCACTATTTATGCAGCGCTCCTTCAATTACATGACCAAAGTGTTTCCGACCAAAAACTGTCAAcccactttttttaattaatgttctgtttttctaCTTCTTTATGGCCAAGACACATATTTATGTACAAACCCATGTACAGTACATCTGTTTgatattaaattaaagtaatctattactattactaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251388.3 True 3162 mRNA 0.41 4 7128165 7139038

Neighbor

gene id symbol gene type direction distance location
LOC103039610 NA coding upstream 126153 6990940 ~ 7002012 (+)
LOC103040557 yod1 coding upstream 140201 6983613 ~ 6987964 (+)
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding upstream 244750 6852509 ~ 6883415 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding upstream 326696 6758208 ~ 6801469 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding upstream 403592 6704096 ~ 6724573 (+)
LOC103037733 LOC108438636 coding downstream 68280 7207318 ~ 7210200 (+)
acot8 acot8,LOC107730625,LOC107670930,LOC107722006 coding downstream 207905 7346943 ~ 7353286 (+)
LOC103037081 srsf6,LOC107654800 coding downstream 215197 7354235 ~ 7360534 (+)
ift52 ift52 coding downstream 223525 7362563 ~ 7375037 (+)
mybl2 mybl2 coding downstream 240719 7379757 ~ 7393057 (+)
G187810 sh2d5 non-coding upstream 77827 7033140 ~ 7050338 (+)
G187743 snrpe non-coding upstream 145411 6978863 ~ 6982754 (+)
G187733 sox13 non-coding upstream 229422 6888272 ~ 6898743 (+)
G187731 NA non-coding upstream 240594 6884576 ~ 6887571 (+)
G187712 NA non-coding upstream 438772 6689020 ~ 6689393 (+)
G187844 NA non-coding downstream 25456 7164494 ~ 7164767 (+)
G187845 NA non-coding downstream 31376 7170414 ~ 7170650 (+)
G187848 NA non-coding downstream 49994 7189032 ~ 7189926 (+)
G187850 NA non-coding downstream 51019 7190057 ~ 7193359 (+)
G187900 NA non-coding downstream 185647 7324685 ~ 7325351 (+)
LOC103029365 NA other upstream 29493 7077165 ~ 7098672 (+)
p3h1 NA other upstream 1329186 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 3733322 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 4126150 2980497 ~ 3002015 (+)
podxl2 NA other upstream 6032828 606833 ~ 1095337 (+)
trnaq-uug_4 NA other downstream 53116 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 972965 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1117758 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2144757 9283795 ~ 9819955 (+)
G188325 NA other downstream 2715269 9854307 ~ 9856995 (+)

Expression


Co-expression Network