podxl2


Basic Information

Item Value
gene id podxl2
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 606833 ~ 1095337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252742
CAGGTTCTGGTCAACAAGCCGGGCAAAGAGGAGGAAGACAATCAGGAGGAGGACACCCACCTTTAGCCAGGCTGGGGAAACCTGGCTCTAATAAAAGAATGAAACGGTTTCTGTTCTGGACGTCTGtggcacaaaaaatacaaatacaaatacaaatacaaatacaaatacagctcCACggcttttttcagttttttatttcctatAATAAAAACATCCGCTGAATATTTGAAGTGATGTGATTGGCTCGTTTGACTCGTAGGGTCATTCGTTTAGGCGTGACTGCGGCAGCCCGGTTAAAGCAGCTGCGGAGAGCTTTGAGAAATTGGATCGATACGGAACGGCTCGATTCTTTAAGAGCGCGAGAACGACGAGCATCAGCCAATCACGTCTCTATcgatctttttttaaagaagctgTTTGATGGGTGTTGAGCTGAGAGCATCAAATCCATAGCTGGGAATGGAATCGTCTGTTTGTGGCTGTTGGTTTATTTCAGGAATAGTTTGGGTAAattttgcaattattgtgattaatcactgaCCCCGGATATGaattatcaattttatcaataCCGATCaattagcaaataaaaaaataaacatcccacaggaaaacagaaaaagacaaaaaggagATCTCTCTAAAATCTCTGTAGTCTCATGGcataagaaaatacatttccaggcctggataagctACTCTGTCTcgtaagaaataatgaaaaataatcatCTAATCTGGAGCCTCTCCCAAGAAATGGGGCTTTTCCTGACAGGGGGGAAAAATTCGGCACTATAGTAGtgctgaaatctgcacccctgccatgaaaagcatGGAGATAATTGCTTAAACTTAACTTAGAAATACtctcccgagagagggtgcttttcctagCGGGGGTGctaaattcggcacaacactggGTTGGCCTGAGCAGGAGGCTATTCCAGGTCATGAAAGTGGAGGAGCTCTTTAATAGAGAGTGTTCCTGGTGGCCAATCAAGATTCTGCAcctaaaaaactaaactaaaacacacaaaaaaagatttttttttgttcaaaaggAACAAATAAGACCGGGATCGTAACGTGGGGGTTTGTTTAAAGGATCCATTTCGATCACAGCCACATCTTTTTGCTCCAGAAAAGGTTTGAAATAAAACTTGCCAAACTTCAGGCACCTTCGAAGCTAGATACTGTTCTAAGCTACACTGACTCAttagaaataaggaaaaataatcatgtcacctgcagcctctcctaaaagagggtgcttttcctagtgggggtgctgaattcgacACAACACCGAATGGCCTGAGCAGGAGGCTGTTCCAGGTCATGAAAGAGGAGAAGCTCTTTAAAAGAGAGTGGCCCTGGTGGCCAATCAAGGTCcctCAAAAGAGGATCCATTTCGATCACAGCCACAATTTGTTTTAGTAAAGGTTTGAAATAAAATTTGCCAAACTTCAGGCACCTTCGAGGCGACAGTTTCACACTTTGTTAAAGTGAAACCGAAGTGAAATCGAGGGTTTCTGGGTTTTCAGTGTTTGGTAGAATGTAAAAGCGGTGTGTTATGAATATGGCTGCTACAGTCTGAGCATATTTCTCCGTTGGTTTATATGGATGCACCTAGTTACCGTATTCAGAGCAGAACATTAATAGCACATTGTAGTTTAACATGATTAGCGCAGAATCAAGCCTACATGCCTTTGCTCTTTAACTGCTTGTTGGAATGGCCGCTCTGACAATGATCTGTTCTTAATGTCCTGTGTTTTCAGCGCTACAGTCCGGGGCGTATTTACGGTGTTAGCTGTACGTGTGTTAGATAAGAATTGCACTAAAGCGAGATGAGGATGTCAATCAGCTCAATTCATTATTTGTAATGCCAAAGCAGAAATACagcaaataaaagaaagaaaatcttTATAATGAGGGAGAATCTGCCACTGATTTAATCGTATTTGCTGTATTTAAAGAATGTGAATCTTACAGTTCAGTAACTGCACGAAAACTGGAGCCATTGATCCACTGCTAATCTGTCTCATAATGTTGGAAAAAGTACAGTTTTTGTTGagtttgttttctgtctttatcagtttttttctaAAGTAGTGATGTTTTTAATTCTAGTCATtgaaatgctataaatgacgtgaaataaaaatattcacacatttatgactttatttaacacatttctcaaacacaaaaacatgaaacaagaCATtagataacattttattattactttttttattcagacatgGGAAAAATAttcaccaaataaaaaaaaatatatgacaattttaaatgtaatgaagtaaaagaaggtaataacttcatttttttttgttttttttgttcacgtCTCAAATTATGTAGCTCACATTATCTCAcaacaataaaattatttatcaaAAAAACAAGATAGTATGACAGGGCAATAAGAAAAATGtcaaacttttattattattttttttttataataattgggCTGTCACAAAAAttgatcgttttttttttttttttttggataatatATTGTTTGAATGATAATATCAAAATGCAAAATTCAAATatcaaaaagtgcaaatatttttaatatatatttttttaaagagcacttTTGAGCACAGTTGagcttttattaaataattagatACTAAATTGGAATTTAGATATTTTCAGGTCATGTTTAGGATACGTTGACAATGCAGTTAACgcaaataatgataatatatacagctctggaaaaaaataagagaccacttgaaaagctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccacc
>TU252743
CAGGTTCTGGTCAACAAGCCGGGCAAAGAGGAGGAAGACAATCAGGAGGAGGACACCCACCTTTAGCCAGGCTGGGGAAACCTGGCTCTAATAAAAGAATGAAACGGTTTCTGTTCTGGACGTCTGtggcacaaaaaatacaaatacaaatacaaatacaaatacaaatacagctcCACggcttttttcagttttttatttcctatAATAAAAACATCCGCTGAATATTTGAAGTGATGTGATTGGCTCGTTTGACTCGTAGGGTCATTCGTTTAGGCGTGACTGCGGCAGCCCGGTTAAAGCAGCTGCGGAGAGCTTTGAGAAATTGGATCGATACGGAACGGCTCGATTCTTTAAGAGCGCGAGAACGACGAGCATCAGCCAATCACGTCTCTATcgatctttttttaaagaagctgTTTGATGGGTGTTGAGCTGAGAGCATCAAATCCATAGCTGGGAATGGAATCGTCTGTTTGTGGCTGTTGGTTTATTTCAGGAATAGTTTGGGTAAattttgcaattattgtgattaatcactgaCCCCGGATATGaattatcaattttatcaataCCGATCaattagcaaataaaaaaataaacatcccacaggaaaacagaaaaagacaaaaaggagATCTCTCTAAAATCTCTGTAGTCTCATGGcataagaaaatacatttccaggcctggataagctACTCTGTCTcgtaagaaataatgaaaaataatcatCTAATCTGGAGCCTCTCCCAAGAAATGGGGCTTTTCCTGACAGGGGGGAAAAATTCGGCACTATAGTAGtgctgaaatctgcacccctgccatgaaaagcatGGAGATAATTGCTTAAACTTAACTTAGAAATACtctcccgagagagggtgcttttcctagCGGGGGTGctaaattcggcacaacactggGTTGGCCTGAGCAGGAGGCTATTCCAGGTCATGAAAGTGGAGGAGCTCTTTAATAGAGAGTGTTCCTGGTGGCCAATCAAGATTCTGCAcctaaaaaactaaactaaaacacacaaaaaaagatttttttttgttcaaaaggAACAAATAAGACCGGGATCGTAACGTGGGGGTTTGTTTAAAGGATCCATTTCGATCACAGCCACATCTTTTTGCTCCAGAAAAGGTTTGAAATAAAACTTGCCAAACTTCAGGCACCTTCGAAGCTAGATACTGTTCTAAGCTACACTGACTCAttagaaataaggaaaaataatcatgtcacctgcagcctctcctaaaagagggtgcttttcctagtgggggtgctgaattcgacACAACACCGAATGGCCTGAGCAGGAGGCTGTTCCAGGTCATGAAAGAGGAGAAGCTCTTTAAAAGAGAGTGGCCCTGGTGGCCAATCAAGGTCCTGCatctaaaaaactaaacaaaaaacacaaaaaaaccctCAAAAGAGGATCCATTTCGATCACAGCCACAATTTGTTTTAGTAAAGGTTTGAAATAAAATTTGCCAAACTTCAGGCACCTTCGAGGCGACAGTTTCACACTTTGTTAAAGTGAAACCGAAGTGAAATCGAGGGTTTCTGGGTTTTCAGTGTTTGGTAGAATGTAAAAGCGGTGTGTTATGAATATGGCTGCTACAGTCTGAGCATATTTCTCCGTTGGTTTATATGGATGCACCTAGTTACCGTATTCAGAGCAGAACATTAATAGCACATTGTAGTTTAACATGATTAGCGCAGAATCAAGCCTACATGCCTTTGCTCTTTAACTGCTTGTTGGAATGGCCGCTCTGACAATGATCTGTTCTTAATGTCCTGTGTTTTCAGCGCTACAGTCCGGGGCGTATTTACGGTGTTAGCTGTACGTGTGTTAGATAAGAATTGCACTAAAGCGAGATGAGGATGTCAATCAGCTCAATTCATTATTTGTAATGCCAAAGCAGAAATACagcaaataaaagaaagaaaatcttTATAATGAGGGAGAATCTGCCACTGATTTAATCGTATTTGCTGTATTTAAAGAATGTGAATCTTACAGTTCAGTAACTGCACGAAAACTGGAGCCATTGATCCACTGCTAATCTGTCTCATAATGTTGGAAAAAGTACAGTTTTTGTTGagtttgttttctgtctttatcagtttttttctaAAGTAGTGATGTTTTTAATTCTAGTCATtgaaatgctataaatgacgtgaaataaaaatattcacacatttatgactttatttaacacatttctcaaacacaaaaacatgaaacaagaCATtagataacattttattattactttttttattcagacatgGGAAAAATAttcaccaaataaaaaaaaatatatgacaattttaaatgtaatgaagtaaaagaaggtaataacttcatttttttttgttttttttgttcacgtCTCAAATTATGTAGCTCACATTATCTCAcaacaataaaattatttatcaaAAAAACAAGATAGTATGACAGGGCAATAAGAAAAATGtcaaacttttattattattttttttttataataattgggCTGTCACAAAAAttgatcgttttttttttttttttttggataatatATTGTTTGAATGATAATATCAAAATGCAAAATTCAAATatcaaaaagtgcaaatatttttaatatatatttttttaaagagcacttTTGAGCACAGTTGagcttttattaaataattagatACTAAATTGGAATTTAGATATTTTCAGGTCATGTTTAGGATACGTTGACAATGCAGTTAACgcaaataatgataatatatacagctctggaaaaaaataagagaccacttgaaaagctctggaatataatcaagagcaagatggatgatcacaaaccatcaaacc
>TU252744
CAGGTTCTGGTCAACAAGCCGGGCAAAGAGGAGGAAGACAATCAGGAGGAGGACACCCACCTTTAGCCAGGCTGGGGAAACCTGGCTCTAATAAAAGAATGAAACGGTTTCTGTTCTGGACGTCTGtggcacaaaaaatacaaatacaaatacaaatacaaatacaaatacagctcCACggcttttttcagttttttatttcctatAATAAAAACATCCGCTGAATATTTGAAGTGATGTGATTGGCTCGTTTGACTCGTAGGGTCATTCGTTTAGGCGTGACTGCGGCAGCCCGGTTAAAGCAGCTGCGGAGAGCTTTGAGAAATTGGATCGATACGGAACGGCTCGATTCTTTAAGAGCGCGAGAACGACGAGCATCAGCCAATCACGTCTCTATcgatctttttttaaagaagctgTTTGATGGGTGTTGAGCTGAGAGCATCAAATCCATAGCTGGGAATGGAATCGTCTGTTTGTGGCTGTTGGTTTATTTCAGGAATAGTTTGGGTAAattttgcaattattgtgattaatcactgaCCCCGGATATGaattatcaattttatcaataCCGATCaattagcaaataaaaaaataaacatcccacaggaaaacagaaaaagacaaaaaggagATCTCTCTAAAATCTCTGTAGTCTCATGGcataagaaaatacatttccaggcctggataagctACTCTGTCTcgtaagaaataatgaaaaataatcatCTAATCTGGAGCCTCTCCCAAGAAATGGGGCTTTTCCTGACAGGGGGGAAAAATTCGGCACTATAGTAGtgctgaaatctgcacccctgccatgaaaagcatGGAGATAATTGCTTAAACTTAACTTAGAAATACtctcccgagagagggtgcttttcctagCGGGGGTGctaaattcggcacaacactggGTTGGCCTGAGCAGGAGGCTATTCCAGGTCATGAAAGAGGAGAAGCTCTTTAAAAGAGAGTGGCCCTGGTGGCCAATCAAGGTCCTGCatctaaaaaactaaacaaaaaacacaaaaaaaccctCAAAAGAGGATCCATTTCGATCACAGCCACAATTTGTTTTAGTAAAGGTTTGAAATAAAATTTGCCAAACTTCAGGCACCTTCGAGGCGACAGTTTCACACTTTGTTAAAGTGAAACCGAAGTGAAATCGAGGGTTTCTGGGTTTTCAGTGTTTGGTAGAATGTAAAAGCGGTGTGTTATGAATATGGCTGCTACAGTCTGAGCATATTTCTCCGTTGGTTTATATGGATGCACCTAGTTACCGTATTCAGAGCAGAACATTAATAGCACATTGTAGTTTAACATGATTAGCGCAGAATCAAGCCTACATGCCTTTGCTCTTTAACTGCTTGTTGGAATGGCCGCTCTGACAATGATCTGTTCTTAATGTCCTGTGTTTTCAGCGCTACAGTCCGGGGCGTATTTACGGTGTTAGCTGTACGTGTGTTAGATAAGAATTGCACTAAAGCGAGATGAGGATGTCAATCAGCTCAATTCATTATTTGTAATGCCAAAGCAGAAATACagcaaataaaagaaagaaaatcttTATAATGAGGGAGAATCTGCCACTGATTTAATCGTATTTGCTGTATTTAAAGAATGTGAATCTTACAGTTCAGTAACTGCACAATTTAATCTGAgtgaaattattattacagagtTATCCCACGAAAACTGGAGCCATTGATCCACTGCTAATCTGTCTCATAATGTTGGAAAAAGTACAGTTTTTGTTGagtttgttttctgtctttatcagtttttttctaAAGTAGTGATGTTTTTAATTCTAGTCATtgaaatgctataaatgacgtgaaataaaaatattcacacatttatgactttatttaacacatttctcaaacacaaaaacatgaaacaagaCATtagataacattttattattactttttttattcagacatgGGAAAAATAttcaccaaataaaaaaaaatatatgacaattttaaatgtaatgaagtaaaagaaggtaataacttcatttttttttgttttttttgttcacgtCTCAAATTATGTAGCTCACATTATCTCAcaacaataaaattatttatcaaAAAAACAAGATAGTATGACAGGGCAATAAGAAAAATGtcaaacttttattattattttttttttataataattgggCTGTCACAAAAAttgatcgttttttttttttttttttggataatatATTGTTTGAATGATAATATCAAAATGCAAAATTCAAATatcaaaaagtgcaaatatttttaatatatatttttttaaagagcacttTTGAGCACAGTTGagcttttattaaataattagatACTAAATTGGAATTTAGATATTTTCAGGTCATGTTTAGGATACGTTGACAATGCAGTTAACgcaaataatgataatatatacagctctggaaaaaaataagagaccacttgaaaagctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccacc
>XM_022682825.1
ATGTTAGATGCCCGTGGCCGAGCTCGTGCGTGTATTCTAAACACCCACCAGCAGCAAATCAAACCAACAACAAAccatttctcttcttcttcttcttcttcttcttcttcttcttcaggctCGTCTCTTCTGCTCCTGATATCTGCTGATGTTCTGAGTGCCGGTCCTGCTGAGCCTCGGCCTCTGCTGGACGTTCCTCTCGGCCTCGAGGAGCACGAGGGAACCCAGCCGGGTCTGATGGAAAATTCCCAGGAGAGTTCCGGCTTCTTCCCGGAGGACAGCGAGGAGAACAAGGCGCCTCGGGTGGCTCGGCAGTGGAGTGTCCAGGGAGAGGTCAACACCAGTCTGGATGCAGACTCCTTGATAGGCTACAATCCGTCTCAGCCTCGTCTCTCGTCCCTCTCTCTCCGCAAAGAACCCCAACAGACCAACTCCTCATCCTTCTTCTCCCCCGCGGGTGAAGCTCCAGATCCAGAACGGTGGGAGAGCGAGTCCAGCGGCTTCCCCCTGAACCCCTCCTCCTCCAGCCTGTCCACCACAGCTGCCAGCCCACTCTTCCACACCGCCGGCTCTGAACTCAGCCTGAGAGACCCCCTGCCCGAGGCCACAGCTGCCCACGACACGTCCCCGCTCCCCGAGGACGAGGACCGGCAGAACCTCCTCACCCAGGCCCCCACTGCTCCAGAAGTAGGACCGTTCCCCAGCCAGACGCCCCTGCAGCCGGACGACACCCGCCGGGACGACTCAGAGATGAGGGAGGAAGATGAagagaatgatgatgatgatgatgatggtggagaGATGGTGGCTTTTCCTACTGAGGTAGACGGTGAGGAGGAAGATGATTGGACGCATCTCACCGCCGGGCCGTCTTCCACTCCGCCGTCCGACATGCCCGCTGTGGGCTTCACCCACATGTCCTGGCAGGATGTGGAGGTCACCAGAGCTGGAGAGGATGAGGAAGCTGAGCTTCGTCACGGCGGCACCGAGTACCTctcagaggcggagctacacGATTCCCAGGAAGCCGTGCAGGTGATCTGTGTGGACTGGAGCAGTCTGGCTGGAAAAGGCTACGTCATCCTCAACATGTCGGAAAACTACGACTGCgaTGAATTCCGTTTGGACAATGGGGACCGGCTGCTGGAGCTGGTGGAGAGTTTATTCTCTCGGAAGATGAACAGTCCTCTGGGCTCGTGGATCATCACACTCAGCAAACCCAGCAGACAGGAGCGCCAGCTACTCATGACACTAGCCAACGAGCAGgGTGTGATCGCCACTAAAGATGTTTTATCAATGCTGGGAGAAATGAGGGGAAGCTTAACTGAGCTCGGTGTTCAGAACTTCTCCAGCGTGAGCACCTGCCACTCCAGGCCCAGTCAGACGCGCAGCGACTACGGGAAGCTGTTCGTGGTTCTGGTGATCATCGGCTCGGTGTGCGTGATCATCATCGCCTCCGGACTCATCTACATCTGCTGGCAGCGCCGCCTGCCCAAGCTGAAGAACATGTCGCGAGGAGAGGAGCTGCATTTCGTGGAGAACGGCTGCCATGACAACCCCACACTGGATGTGACGAGCGACGGGCAGGCGGAGATGCAGGAGAAGAAGCACAGTGCCAACGGAGTGCCcgtgggaggaggaggagggggaggaggtGGCGGCGGCGGCAGCCACAGTGGCAGCGGCAGCGGCAGTGGCAGCGGCAGCGGCAGCGGCAGCGGCTGGCAGGTTCTGGTCAACAAGCCGGGCAAAGAGGAGGAAGACAATCAGGAGGAGGACACCCACCTTTAGCCAGGCTGGGGAAACCTGGCTCTAATAAAAGAATGAAACGGTTTCTGTTCTGGACGTCTGtggcacaaaaaatacaaatacaaatacaaatacaaatacaaataca

Function

NR:

description
podocalyxin-like protein 2

GO:

id name namespace
GO:0008227 G protein-coupled amine receptor activity molecular_function
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU252742 False 2835 lncRNA 0.37 3 629349 632261
TU252743 True 2869 lncRNA 0.36 3 629349 1095337
TU252744 False 2525 lncRNA 0.35 2 629349 632261
XM_022682825.1 False 1897 mRNA 0.58 9 606833 629520

Neighbor

gene id symbol gene type direction distance location
mcm2 mcm2,LOC107718478 coding upstream 5826 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 21029 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 28931 569183 ~ 577902 (+)
bcdin3d NA coding upstream 63303 541330 ~ 543530 (+)
gpd1 gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423,LOC100136539 coding upstream 101793 495073 ~ 505040 (+)
dock3 dock3 coding downstream 51115 1146452 ~ 1358373 (+)
manf manf,LOC107691893,LOC107567190,LOC107592842,LOC107677041,LOC107750980 coding downstream 267314 1362651 ~ 1368260 (+)
rbm15b rbm15b coding downstream 276382 1371719 ~ 1378558 (+)
dag1 dag1,LOC108415278,LOC107691879,LOC108415277 coding downstream 806301 1901638 ~ 1956628 (+)
nicn1 nicn1 coding downstream 950311 2045648 ~ 2055723 (+)
G186401 NA non-coding upstream 43294 558952 ~ 563539 (+)
G186402 NA non-coding upstream 45321 559399 ~ 561512 (+)
G186385 NA non-coding upstream 108425 495704 ~ 498408 (+)
G186375 NA non-coding upstream 183022 422903 ~ 423811 (+)
G186368 NA non-coding upstream 266015 313960 ~ 340818 (+)
G186457 NA non-coding downstream 28209 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 294588 1389925 ~ 1390483 (+)
G186642 NA non-coding downstream 300076 1395413 ~ 1396643 (+)
G186637 pcbp4,LOC108436686 non-coding downstream 313786 1409123 ~ 1412311 (+)
G186685 NA non-coding downstream 459835 1555172 ~ 1555452 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 68617 510575 ~ 538216 (+)
G186231 NA other upstream 491746 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1885160 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2297050 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4684554 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 5981828 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6096817 7192154 ~ 7192226 (+)

Expression


Co-expression Network