RNA id: TU252743


Basic Information

Item Value
RNA id TU252743
length 2869
lncRNA type read_through
GC content 0.36
exon number 3
gene id podxl2
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 606833 ~ 1095337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTTCTGGTCAACAAGCCGGGCAAAGAGGAGGAAGACAATCAGGAGGAGGACACCCACCTTTAGCCAGGCTGGGGAAACCTGGCTCTAATAAAAGAATGAAACGGTTTCTGTTCTGGACGTCTGtggcacaaaaaatacaaatacaaatacaaatacaaatacaaatacagctcCACggcttttttcagttttttatttcctatAATAAAAACATCCGCTGAATATTTGAAGTGATGTGATTGGCTCGTTTGACTCGTAGGGTCATTCGTTTAGGCGTGACTGCGGCAGCCCGGTTAAAGCAGCTGCGGAGAGCTTTGAGAAATTGGATCGATACGGAACGGCTCGATTCTTTAAGAGCGCGAGAACGACGAGCATCAGCCAATCACGTCTCTATcgatctttttttaaagaagctgTTTGATGGGTGTTGAGCTGAGAGCATCAAATCCATAGCTGGGAATGGAATCGTCTGTTTGTGGCTGTTGGTTTATTTCAGGAATAGTTTGGGTAAattttgcaattattgtgattaatcactgaCCCCGGATATGaattatcaattttatcaataCCGATCaattagcaaataaaaaaataaacatcccacaggaaaacagaaaaagacaaaaaggagATCTCTCTAAAATCTCTGTAGTCTCATGGcataagaaaatacatttccaggcctggataagctACTCTGTCTcgtaagaaataatgaaaaataatcatCTAATCTGGAGCCTCTCCCAAGAAATGGGGCTTTTCCTGACAGGGGGGAAAAATTCGGCACTATAGTAGtgctgaaatctgcacccctgccatgaaaagcatGGAGATAATTGCTTAAACTTAACTTAGAAATACtctcccgagagagggtgcttttcctagCGGGGGTGctaaattcggcacaacactggGTTGGCCTGAGCAGGAGGCTATTCCAGGTCATGAAAGTGGAGGAGCTCTTTAATAGAGAGTGTTCCTGGTGGCCAATCAAGATTCTGCAcctaaaaaactaaactaaaacacacaaaaaaagatttttttttgttcaaaaggAACAAATAAGACCGGGATCGTAACGTGGGGGTTTGTTTAAAGGATCCATTTCGATCACAGCCACATCTTTTTGCTCCAGAAAAGGTTTGAAATAAAACTTGCCAAACTTCAGGCACCTTCGAAGCTAGATACTGTTCTAAGCTACACTGACTCAttagaaataaggaaaaataatcatgtcacctgcagcctctcctaaaagagggtgcttttcctagtgggggtgctgaattcgacACAACACCGAATGGCCTGAGCAGGAGGCTGTTCCAGGTCATGAAAGAGGAGAAGCTCTTTAAAAGAGAGTGGCCCTGGTGGCCAATCAAGGTCCTGCatctaaaaaactaaacaaaaaacacaaaaaaaccctCAAAAGAGGATCCATTTCGATCACAGCCACAATTTGTTTTAGTAAAGGTTTGAAATAAAATTTGCCAAACTTCAGGCACCTTCGAGGCGACAGTTTCACACTTTGTTAAAGTGAAACCGAAGTGAAATCGAGGGTTTCTGGGTTTTCAGTGTTTGGTAGAATGTAAAAGCGGTGTGTTATGAATATGGCTGCTACAGTCTGAGCATATTTCTCCGTTGGTTTATATGGATGCACCTAGTTACCGTATTCAGAGCAGAACATTAATAGCACATTGTAGTTTAACATGATTAGCGCAGAATCAAGCCTACATGCCTTTGCTCTTTAACTGCTTGTTGGAATGGCCGCTCTGACAATGATCTGTTCTTAATGTCCTGTGTTTTCAGCGCTACAGTCCGGGGCGTATTTACGGTGTTAGCTGTACGTGTGTTAGATAAGAATTGCACTAAAGCGAGATGAGGATGTCAATCAGCTCAATTCATTATTTGTAATGCCAAAGCAGAAATACagcaaataaaagaaagaaaatcttTATAATGAGGGAGAATCTGCCACTGATTTAATCGTATTTGCTGTATTTAAAGAATGTGAATCTTACAGTTCAGTAACTGCACGAAAACTGGAGCCATTGATCCACTGCTAATCTGTCTCATAATGTTGGAAAAAGTACAGTTTTTGTTGagtttgttttctgtctttatcagtttttttctaAAGTAGTGATGTTTTTAATTCTAGTCATtgaaatgctataaatgacgtgaaataaaaatattcacacatttatgactttatttaacacatttctcaaacacaaaaacatgaaacaagaCATtagataacattttattattactttttttattcagacatgGGAAAAATAttcaccaaataaaaaaaaatatatgacaattttaaatgtaatgaagtaaaagaaggtaataacttcatttttttttgttttttttgttcacgtCTCAAATTATGTAGCTCACATTATCTCAcaacaataaaattatttatcaaAAAAACAAGATAGTATGACAGGGCAATAAGAAAAATGtcaaacttttattattattttttttttataataattgggCTGTCACAAAAAttgatcgttttttttttttttttttggataatatATTGTTTGAATGATAATATCAAAATGCAAAATTCAAATatcaaaaagtgcaaatatttttaatatatatttttttaaagagcacttTTGAGCACAGTTGagcttttattaaataattagatACTAAATTGGAATTTAGATATTTTCAGGTCATGTTTAGGATACGTTGACAATGCAGTTAACgcaaataatgataatatatacagctctggaaaaaaataagagaccacttgaaaagctctggaatataatcaagagcaagatggatgatcacaaaccatcaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252751 lncRNA upstream 1226 626712 ~ 628123 (+) True G186410
TU252750 lncRNA upstream 2972 615318 ~ 626377 (+) True G186409
TU252734 lncRNA upstream 65810 558952 ~ 563539 (+) True G186401
TU252823 lncRNA downstream 28209 1123546 ~ 1140605 (+) True G186457
TU253097 lncRNA downstream 294588 1389925 ~ 1390483 (+) True G186641
TU253098 lncRNA downstream 300076 1395413 ~ 1396643 (+) True G186642
TU253091 lncRNA downstream 313786 1409123 ~ 1412311 (+) True G186637
TU253155 lncRNA downstream 459835 1555172 ~ 1555452 (+) True G186685
XM_007251501.3 mRNA upstream 28342 587222 ~ 601007 (+) False mcm2
XM_015606393.2 mRNA upstream 28342 588252 ~ 601007 (+) True mcm2
XM_007251499.3 mRNA upstream 43545 582798 ~ 585804 (+) True ccdc51
XM_007251500.3 mRNA upstream 43545 582828 ~ 585804 (+) False ccdc51
XM_022682184.1 mRNA upstream 51447 569183 ~ 577902 (+) True LOC103029902
XM_022682201.1 mRNA downstream 51115 1146452 ~ 1358373 (+) True dock3
XM_022682202.1 mRNA downstream 51115 1146452 ~ 1358373 (+) False dock3
XM_022682203.1 mRNA downstream 51115 1146452 ~ 1358373 (+) False dock3
XM_022682204.1 mRNA downstream 51115 1146452 ~ 1358373 (+) False dock3
XM_022682205.1 mRNA downstream 51116 1146453 ~ 1358373 (+) False dock3
XR_002651586.1 other upstream 91133 510575 ~ 538216 (+) True cers5
TU252478 other upstream 514262 107396 ~ 115087 (+) True G186231
TU253378 other downstream 1885160 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2297050 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 2828115 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 3694639 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 5051348 6146685 ~ 6147519 (+) True LOC111195362

Expression Profile