LOC111195362


Basic Information

Item Value
gene id LOC111195362
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6146685 ~ 6147519 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651591.1
GTTTGCCAAAAGAGGAGGAGTCCAAGGACGAAAGATCATGCAACATGTGACGGCCATGGCACAGAGTGACTACGTTGAAGTTAAAAGAGAATCAGTCCTCAGAGCTCTGTGTCTCTACTTGAATGAAGAGCCGGATGATCTCATTCGTGAATATATGGTTTCTGATGTGGCCGCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651591.1 True 177 ncRNA 0.46 3 6146685 6147519

Neighbor

gene id symbol gene type direction distance location
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding upstream 311059 5817984 ~ 5835626 (+)
ap5b1 ap5b1 coding upstream 375388 5765449 ~ 5771297 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 415341 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 629120 5508308 ~ 5517565 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 660272 5472482 ~ 5486413 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 94508 6242027 ~ 6258457 (+)
LOC103043630 LOC108437608 coding downstream 129280 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 144281 6291800 ~ 6298905 (+)
elk4 elk4,LOC108437624 coding downstream 158275 6305794 ~ 6325915 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding downstream 556577 6704096 ~ 6724573 (+)
G187584 NA non-coding upstream 246960 5888833 ~ 5899725 (+)
G187583 NA non-coding upstream 260683 5885802 ~ 5886002 (+)
G187493 NA non-coding upstream 302855 5759517 ~ 5843830 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 383194 5701793 ~ 5763491 (+)
G187484 NA non-coding upstream 505629 5640822 ~ 5641056 (+)
G187640 NA non-coding downstream 153333 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 155247 6302766 ~ 6304222 (+)
G187637 NA non-coding downstream 170295 6317814 ~ 6334469 (+)
G187647 NA non-coding downstream 189593 6337112 ~ 6340403 (+)
G187650 NA non-coding downstream 195648 6343167 ~ 6388440 (+)
p3h1 NA other upstream 347706 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2751842 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3144670 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5051348 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5608469 510575 ~ 538216 (+)
LOC103029365 NA other downstream 929646 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1044635 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1964484 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2109277 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 3136276 9283795 ~ 9819955 (+)

Expression


Co-expression Network