elk4 (elk4,LOC108437624)


Basic Information

Item Value
gene id elk4
gene name elk4,LOC108437624
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6305794 ~ 6325915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251404.3
gagagactgagactgatggagagatatagagcgcgagagagagtgagagagtttaacttcctgttttttttgcagcacaAAACACTGCACTGGGGTGGGATTAGCAGTAACTCTGCTGGGTTTAGTGCTGTTCTCTGGTATATATGACTGACCAGCGGCTGTTTTACGCGTTAAATCGCGATAAATTCTATATTCGTGGATGGATTTAATCTGGGAGAGGAGAGCATGGACAGCTCAGTGACCCTGTGGCAGTTCCTGCTCCAGCTCCTTTTGGACCCCAGCAACGACCAGCTCATCTGCTGGACCAATGAGGACGGGGAGTTCAAGCTGCTGCAGGCGGAGGAGGTGGCCAAGCTGTGGGGTGCTCGCAAAAACAAACCCAGCATGAACTACGATAAACTGAGCCGGGCTCTGCGCTACTACTACGACAAGAACATCATTAAGAAAGTGAATGGCCAGAAGTTCGTGTACCGCTTTGTCTCCTACCCGGATATTCTGAAAGGCGACATCATGGCCAAGGTGGACGGGCCTGCAGAGGGGGGCACGGGGAGCTCCTCCCTTCCACTGCCTGACAAAAACACCAGCACCATAAGAGACAACAAAGAAATCAAAGCAGCAGGAGAGCGGGGAAACGGAGCTCTCGGCCTGCCGAAACCTTCTAGTCGGAATGACTACATCCACTCAGGTCTGTACACCTCCTTCACCCTGACCTCCCTGCAGTCCGGAACACAGCTTTTCAAGTCCATCAAAATGGAAAACCCTGGAGAGAAGCTGGCTGAGAAGAAAGCCGGCCTTGAGGCTTCTCCGCAGCCCTCACAGCCGCCCTCGGTCATCAAATTCGGCACCGCTCCTCCAAGCAGAGCTCTTCAGCAGGCTTCAGAGAAGCCGTCCCTGCCCGTGCACCCCCTCCAAGCCCCGCTGCCCGTATCAGAGATTGAGAGCAAGCAGCAGGCCGGCCAGCACGTGGTGTGCTCGCTTGAAGTGGTGGCTGGAACGGAGACGGCCCCGGCAGCTTTCCGCCTTTCAGGGATCTCCCCTTCGCTGCCCTGCCGCTCGCCTTCCCCCAGCACCCTGCAGGACTCTCAGGAGCTGGTGATCGACACCGACATCGAGTCCATCTCCTCCCAGCCCTCTGAGCTCCAGCTGCAGGTGTCCAGTGATACTATCCACACCTCAGAGTCAGAGATGTCGCTGTCTCCAGCTCGCAGCCTGAGTGGCAAGTCCAAAAAGCCCAAAGTTCTGGAGCTGAGGCCCACGCTGCTGGTGACAAGCTCAGACATGAGCCCCCTTACTCTCTCCAGCCCCTCGCTGCCCACAGCCTTCCTGCAGacgCCCCTACTGCTCACGCCCAGCCCTCTTCTCTCCAACATTCACTTCTGGAGCACGCTCAGTCCCGTCGCCCCTCTCAGCCCTGCCCGTCGCCAGGGGGCGCACACCCTCTTTCAGtTCCCCTCTGTCCTGGGCTCCACCCAGATATCCGTGCCAGTACACAGCCTAGACGGCACCAACACACCAGGACCTCTGTCTCCAGACCCACAGAAGACATAAACAGAGATAAGGACTGCTGGTGTCGGTGGGTTTGTTCGCCTCTACACAAACTGTGTAACGTGTATCGTTCGTCCCCAGCCCCCGGCTGTGTTCTTCTACATTAAGGTGCAGACGCCACCTTAGCCGTGTGCTCGTTGACCAAATTCCGCCCCTCTTTTATGGAAAAGAGGACAAGTATTCAAGATGTTGATTGCTGGTGGTGGAAGCTTCTTTGGGTGTTCAGGACGGGTATATATTCACAGCATCCCTGAAAGGCAATCACAATCAATATCATTGTCTGTGTCATTTGGAGACATACGATCAAAAGGATTACCACATAAACTTCTGTCCTGTTTGGTTGTGGTATTCTTATGAGAACTGCGTTTGGCCTTCAGGGAATcctcaaacacatttttttattctttctttaaaaaagggtATATATTATCATAGAAATCAGCGAAGCCTCAATGTTTAAAGAAGACAGTGTCCCTCTCAATCAGGATACTATCATAATTCTTATAGTTCTTATAGTGAAAGTTTGTTGGAAATGACTTCTTATCTGTTTTACTGAGTGCGTATACATGTACGTTCATAATCGGGTTACTGCAGATAATTATAAGATTATATAAGTCTGTTTCATTTGATTAAAGATTAAGAAATCTGAGATACAGAGTGCTGTAGTAATCAGTAGGTCAGTAATTGTGTTTCTCAGTTCTtgcatactcttaaccggagtatGCCACGACTTCTGGTGCTGGAAATAGATGAGCAGCATTTACCCAGCACACAGGAGAGCCCTGTGAGGCAAATGTTtgcatttttaatgtaaaaaaaaaaaaaaagatctgcagTATGATGTTTTGGTTTTCGTCTAGAGCTGGATGATATGACCAAAATTGATATAAATTTGTTAGTTTTAATCACATTCTTAAAAATTgctacttaaatactaaaatacttttATGCATAATATAGtgatttttaattcagtttttgctgcacatcatccaCTTGAACATTTGGATTTTTACACATTCTCTGTAATTGAAGTATATttttgatacaaaaaaaatcacgatATGACCAAATGTCGTCAAATTGGCTAGCTCTAAGTACATCacattttgtgattttattgGCTGGCTACTAAGCAAAGATCTAATAATTGCCTGACTCAAGTAAACCCTAGTGTTTTCCATTCAAAGTCACATTCAAAGTCGGattactgcagttatctgatcattaaattaatcatgtaaacGGTGTACTTTGATTTTTTTAGATTGAAGGAAGgtctttaaattaattttaagaaattaagaaattcgATAAGGAGAGGATTTGTCCAtctgtgcatgtgtgaaaaCGCACCctaatagcattagcattacccagcATTACCCGAGTTCAAAAACATGCACACGAAAACTTTGATGTCCTGCAGTAATGAAATTTTGAAACGCATGTAAACGCACTCAATATTCCTCTCAATCAGGATACTAACAGAGTATCCTCATCCTAGTTTGTTGTAAAGGAGTTATTGGTTTGTAAAATACTGATTCTCATATGAAATGATAACTGTACTAATGAGGTATCGACAGCACAGACACAAAGTTTAATCACGTATCTCTTCAGATCAGCTGTTTAACCCGTTTTTCGTTATGTCATTTTGCCAAGCCAAACCTTTCCTTCTGTACCTTCTTTGCCTTCTTACTCCGGGTGAATGTGAGCAAACCTTTCCTTACGTCGCACCCGCCGCCATATATATCTACAAGCACCTTGACATTTCTGCCACAGAGCTCGGATCAGTCAGGCGAAAACGCACATAGACACAAACCTAGCTGCACTGACATCATCTCGAGGACTCTTCGAAATCTCTCCAGAATGCCTAGAGATAATAGTGTGTAGTTAAGATGTGGTGAAGAATGGCCACGATGACTCTAGATGAGGCCTagatgcttatttttttatctaaggAAGTGCTTTCAAGACTGTTAAAATAgaatatagagtatatatatatatatatatatataggaatatAGGTTTTCCTATATTTGAAATTCTTAGGTTTaggttagttaactagctaaatgAATGTTGGCAGCCAACGTGTgagataaaataatttaacacaaaaaataatatcatttgcaattcttcttcttaaaaaaaaaaaacctacctGTGTTCACTCTGGCAGGTGACAAGTGGCCCTACTGTCTAACtgtttaagggtgttttcacacctgtagtttgtatAATTTTCTGGTCCAAATCAGTTgataagtttgtttatttggagcgttttctcaaaccgttggtttggtttggtttggtttcacacaggcaaaaacctaaacgcactaAAATGTGCCTCAACAAAATACGCAAACACATCTGATtgtctcttctgattggtcagagctctcAGGCGCAGGAGCACGAGAGTTAATACAGCAAGAAGGTTCTGGAGTTCATTTGGAACCGGACCAAGACATCTCCTCTCGTGGGTCTTCTGAGTGCAGTTacagttttcacacctgctgaaaCAAACCGCACTAAAGCCCtgtctggacgggattagtttctcagggggacgtctgtgaaaaatatttcacacttctactcagtgataaaactcttgtatcCAGACTGTAAGTGAAAAAACTGGAGGAtcagtgaggttttttttttggctttctcggtcacatgacatcacggcgttcagtagctcctccatttccactcactgtttttttttttttttttttttttttacgtgtttCTCTCTGGAAATGTGTACCGAAAGTGTAaaaggacgtctgagaaaaacacgtacatggtcgttctggacgggaataaaatcacagaagacTCCCTATAAAATAGGGAATTACGCCAGgaccccctgaaaaactaatcccgtccggataggacTAAAGGGTGCAAATGAACCAGAGTTtattttaaccggaccaaatagtgctggtgtgaaaacgccctaagcaGAAGCTGCCGACCTCAGAAGTTCTGCTCCTCCAGAACCGTGGTGCAGCACAACATGAAGCACAAATGTGCAGCAGATTGTTCAAACATAAAACTtagaacaatacaataaatagaaCTATAACATGACAGTGGCCCAAATAATTTGTTTGGGCCAACCAGCTTAGAATGTATCTTAAACATATCATAATTCATTTGTAAaacattgaacaaaaaaaaaatctcataggAAGCAACAGGTCGTTTGTCACTCTGGCGCTTGCGAGTGTGAATTCAGGGTTAGTAAGTCTTGTAAACTCAAGTAAAACAGaagtaaaacaaaaaggaaaatgaAGCCTTACTacatgaaatgtaaaatacttTTACCTAATTCTACacaacttttgtttggtgcttTTACTATGAAACACATCAAGAACAACGTCCTCATTTGCCGCAGCTTGCAGCAGATCTACTGCGCAGGTTTAGCTAAGATTAGTGCATTGCTGTTTTCTGTTGCTGAAGTAATTATTTTCCAGTTGGTAAGCAAGCAAATGCCACTCATTAAACTCCTCTGGCATGCGA
>XM_022682307.1
gagactgatggagagatatagagcgcgagagagaAGGAGAGCATGGACAGCTCAGTGACCCTGTGGCAGTTCCTGCTCCAGCTCCTTTTGGACCCCAGCAACGACCAGCTCATCTGCTGGACCAATGAGGACGGGGAGTTCAAGCTGCTGCAGGCGGAGGAGGTGGCCAAGCTGTGGGGTGCTCGCAAAAACAAACCCAGCATGAACTACGATAAACTGAGCCGGGCTCTGCGCTACTACTACGACAAGAACATCATTAAGAAAGTGAATGGCCAGAAGTTCGTGTACCGCTTTGTCTCCTACCCGGATATTCTGAAAGGCGACATCATGGCCAAGGTGGACGGGCCTGCAGAGGGGGGCACGGGGAGCTCCTCCCTTCCACTGCCTGACAAAAACACCAGCACCATAAGAGACAACAAAGAAATCAAAGCAGCAGGAGAGCGGGGAAACGGAGCTCTCGGCCTGCCGAAACCTTCTAGTCGGAATGACTACATCCACTCAGGTCTGTACACCTCCTTCACCCTGACCTCCCTGCAGTCCGGAACACAGCTTTTCAAGTCCATCAAAATGGAAAACCCTGGAGAGAAGCTGGCTGAGAAGAAAGCCGGCCTTGAGGCTTCTCCGCAGCCCTCACAGCCGCCCTCGGTCATCAAATTCGGCACCGCTCCTCCAAGCAGAGCTCTTCAGCAGGCTTCAGAGAAGCCGTCCCTGCCCGTGCACCCCCTCCAAGCCCCGCTGCCCGTATCAGAGATTGAGAGCAAGCAGCAGGCCGGCCAGCACGTGGTGTGCTCGCTTGAAGTGGTGGCTGGAACGGAGACGGCCCCGGCAGCTTTCCGCCTTTCAGGGATCTCCCCTTCGCTGCCCTGCCGCTCGCCTTCCCCCAGCACCCTGCAGGACTCTCAGGAGCTGGTGATCGACACCGACATCGAGTCCATCTCCTCCCAGCCCTCTGAGCTCCAGCTGCAGGTGTCCAGTGATACTATCCACACCTCAGAGTCAGAGATGTCGCTGTCTCCAGCTCGCAGCCTGAGTGGCAAGTCCAAAAAGCCCAAAGTTCTGGAGCTGAGGCCCACGCTGCTGGTGACAAGCTCAGACATGAGCCCCCTTACTCTCTCCAGCCCCTCGCTGCCCACAGCCTTCCTGCAGacgCCCCTACTGCTCACGCCCAGCCCTCTTCTCTCCAACATTCACTTCTGGAGCACGCTCAGTCCCGTCGCCCCTCTCAGCCCTGCCCGTCGCCAGGGGGCGCACACCCTCTTTCAGtTCCCCTCTGTCCTGGGCTCCACCCAGATATCCGTGCCAGTACACAGCCTAGACGGCACCAACACACCAGGACCTCTGTCTCCAGACCCACAGAAGACATAAACAGAGATAAGGACTGCTGGTGTCGGTGGGTTTGTTCGCCTCTACACAAACTGTGTAACGTGTATCGTTCGTCCCCAGCCCCCGGCTGTGTTCTTCTACATTAAGGTGCAGACGCCACCTTAGCCGTGTGCTCGTTGACCAAATTCCGCCCCTCTTTTATGGAAAAGAGGACAAGTATTCAAGATGTTGATTGCTGGTGGTGGAAGCTTCTTTGGGTGTTCAGGACGGGTATATATTCACAGCATCCCTGAAAGGCAATCACAATCAATATCATTGTCTGTGTCATTTGGAGACATACGATCAAAAGGATTACCACATAAACTTCTGTCCTGTTTGGTTGTGGTATTCTTATGAGAACTGCGTTTGGCCTTCAGGGAATcctcaaacacatttttttattctttctttaaaaaagggtATATATTATCATAGAAATCAGCGAAGCCTCAATGTTTAAAGAAGACAGTGTCCCTCTCAATCAGGATACTATCATAATTCTTATAGTTCTTATAGTGAAAGTTTGTTGGAAATGACTTCTTATCTGTTTTACTGAGTGCGTATACATGTACGTTCATAATCGGGTTACTGCAGATAATTATAAGATTATATAAGTCTGTTTCATTTGATTAAAGATTAAGAAATCTGAGATACAGAGTGCTGTAGTAATCAGTAGGTCAGTAATTGTGTTTCTCAGTTCTtgcatactcttaaccggagtatGCCACGACTTCTGGTGCTGGAAATAGATGAGCAGCATTTACCCAGCACACAGGAGAGCCCTGTGAGGCAAATGTTtgcatttttaatgtaaaaaaaaaaaaaaagatctgcagTATGATGTTTTGGTTTTCGTCTAGAGCTGGATGATATGACCAAAATTGATATAAATTTGTTAGTTTTAATCACATTCTTAAAAATTgctacttaaatactaaaatacttttATGCATAATATAGtgatttttaattcagtttttgctgcacatcatccaCTTGAACATTTGGATTTTTACACATTCTCTGTAATTGAAGTATATttttgatacaaaaaaaatcacgatATGACCAAATGTCGTCAAATTGGCTAGCTCTAAGTACATCacattttgtgattttattgGCTGGCTACTAAGCAAAGATCTAATAATTGCCTGACTCAAGTAAACCCTAGTGTTTTCCATTCAAAGTCACATTCAAAGTCGGattactgcagttatctgatcattaaattaatcatgtaaacGGTGTACTTTGATTTTTTTAGATTGAAGGAAGgtctttaaattaattttaagaaattaagaaattcgATAAGGAGAGGATTTGTCCAtctgtgcatgtgtgaaaaCGCACCctaatagcattagcattacccagcATTACCCGAGTTCAAAAACATGCACACGAAAACTTTGATGTCCTGCAGTAATGAAATTTTGAAACGCATGTAAACGCACTCAATATTCCTCTCAATCAGGATACTAACAGAGTATCCTCATCCTAGTTTGTTGTAAAGGAGTTATTGGTTTGTAAAATACTGATTCTCATATGAAATGATAACTGTACTAATGAGGTATCGACAGCACAGACACAAAGTTTAATCACGTATCTCTTCAGATCAGCTGTTTAACCCGTTTTTCGTTATGTCATTTTGCCAAGCCAAACCTTTCCTTCTGTACCTTCTTTGCCTTCTTACTCCGGGTGAATGTGAGCAAACCTTTCCTTACGTCGCACCCGCCGCCATATATATCTACAAGCACCTTGACATTTCTGCCACAGAGCTCGGATCAGTCAGGCGAAAACGCACATAGACACAAACCTAGCTGCACTGACATCATCTCGAGGACTCTTCGAAATCTCTCCAGAATGCCTAGAGATAATAGTGTGTAGTTAAGATGTGGTGAAGAATGGCCACGATGACTCTAGATGAGGCCTagatgcttatttttttatctaaggAAGTGCTTTCAAGACTGTTAAAATAgaatatagagtatatatatatatatatatatataggaatatAGGTTTTCCTATATTTGAAATTCTTAGGTTTaggttagttaactagctaaatgAATGTTGGCAGCCAACGTGTgagataaaataatttaacacaaaaaataatatcatttgcaattcttcttcttaaaaaaaaaaaacctacctGTGTTCACTCTGGCAGGTGACAAGTGGCCCTACTGTCTAACtgtttaagggtgttttcacacctgtagtttgtatAATTTTCTGGTCCAAATCAGTTgataagtttgtttatttggagcgttttctcaaaccgttggtttggtttggtttggtttcacacaggcaaaaacctaaacgcactaAAATGTGCCTCAACAAAATACGCAAACACATCTGATtgtctcttctgattggtcagagctctcAGGCGCAGGAGCACGAGAGTTAATACAGCAAGAAGGTTCTGGAGTTCATTTGGAACCGGACCAAGACATCTCCTCTCGTGGGTCTTCTGAGTGCAGTTacagttttcacacctgctgaaaCAAACCGCACTAAAGCCCtgtctggacgggattagtttctcagggggacgtctgtgaaaaatatttcacacttctactcagtgataaaactcttgtatcCAGACTGTAAGTGAAAAAACTGGAGGAtcagtgaggttttttttttggctttctcggtcacatgacatcacggcgttcagtagctcctccatttccactcactgtttttttttttttttttttttttttacgtgtttCTCTCTGGAAATGTGTACCGAAAGTGTAaaaggacgtctgagaaaaacacgtacatggtcgttctggacgggaataaaatcacagaagacTCCCTATAAAATAGGGAATTACGCCAGgaccccctgaaaaactaatcccgtccggataggacTAAAGGGTGCAAATGAACCAGAGTTtattttaaccggaccaaatagtgctggtgtgaaaacgccctaagcaGAAGCTGCCGACCTCAGAAGTTCTGCTCCTCCAGAACCGTGGTGCAGCACAACATGAAGCACAAATGTGCAGCAGATTGTTCAAACATAAAACTtagaacaatacaataaatagaaCTATAACATGACAGTGGCCCAAATAATTTGTTTGGGCCAACCAGCTTAGAATGTATCTTAAACATATCATAATTCATTTGTAAaacattgaacaaaaaaaaaatctcataggAAGCAACAGGTCGTTTGTCACTCTGGCGCTTGCGAGTGTGAATTCAGGGTTAGTAAGTCTTGTAAACTCAAGTAAAACAGaagtaaaacaaaaaggaaaatgaAGCCTTACTacatgaaatgtaaaatacttTTACCTAATTCTACacaacttttgtttggtgcttTTACTATGAAACACATCAAGAACAACGTCCTCATTTGCCGCAGCTTGCAGCAGATCTACTGCGCAGGTTTAGCTAAGATTAGTGCATTGCTGTTTTCTGTTGCTGAAGTAATTATTTTCCAGTTGGTAAGCAAGCAAATGCCACTCATTAAACTCCTCTGGCATGCGA

Function

symbol description
elk4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELK4 (ETS transcription factor ELK4).

NR:

description
PREDICTED: ETS domain-containing protein Elk-4

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K04376 ELK4, SAP1; ETS domain-containing protein Elk-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251404.3 True 5103 mRNA 0.44 6 6305794 6325915
XM_022682307.1 False 4920 mRNA 0.44 6 6305802 6325915

Neighbor

gene id symbol gene type direction distance location
LOC103043323 LOC108437607 coding upstream 6889 6291800 ~ 6298905 (+)
LOC103043630 LOC108437608 coding upstream 17726 6276799 ~ 6288068 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding upstream 47337 6242027 ~ 6258457 (+)
LOC111195362 NA coding upstream 158275 6146685 ~ 6147519 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding upstream 470168 5817984 ~ 5835626 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding downstream 378181 6704096 ~ 6724573 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding downstream 432293 6758208 ~ 6801469 (+)
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding downstream 526594 6852509 ~ 6883415 (+)
LOC103040557 yod1 coding downstream 657698 6983613 ~ 6987964 (+)
LOC103039610 NA coding downstream 665025 6990940 ~ 7002012 (+)
G187645 NA non-coding upstream 1572 6302766 ~ 6304222 (+)
G187640 NA non-coding upstream 3045 6300852 ~ 6302749 (+)
G187610 NA non-coding upstream 127164 6105192 ~ 6178630 (+)
G187584 NA non-coding upstream 406069 5888833 ~ 5899725 (+)
G187583 NA non-coding upstream 419792 5885802 ~ 5886002 (+)
G187647 NA non-coding downstream 11197 6337112 ~ 6340403 (+)
G187650 NA non-coding downstream 17252 6343167 ~ 6388440 (+)
G187659 NA non-coding downstream 62602 6388517 ~ 6389373 (+)
G187703 NA non-coding downstream 204838 6530753 ~ 6530980 (+)
G187710 NA non-coding downstream 339111 6665026 ~ 6665342 (+)
p3h1 NA other upstream 506815 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2910951 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3303779 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5210457 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5767578 510575 ~ 538216 (+)
LOC103029365 NA other downstream 751250 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 866239 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1786088 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1930881 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2957880 9283795 ~ 9819955 (+)

Expression


Co-expression Network