LOC103040557 (yod1)


Basic Information

Item Value
gene id LOC103040557
gene name yod1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6983613 ~ 6987964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251396.3
AGATGACATGAGCTCAACAACTGCTTGCGTCTGCACTGTTTTGTGCACGCGGTGTGACGCAGTGCGCATGTCAGTTGTTGGCCAGTGTGTTGTTATTTGGAAGGCGCTCCGAGAACTGAAGGGACTCAGGATGCTGCGACTGAGGTGCAAGGCCAAGAATGGAACCCATCTGATGCAAGGCCTCACGCACCAGTCCTGTGTCCAAGAGCTGAAAACCAAGGTAGAGGAGCTAACTGGAATTCCATGCGACGTTCAGAAGATCATGGTGGGCTACCCACCATCCAGCTTGGATCTTCGCAATGGAGATGCTCACCTAAAAGACTACCCTATAAAATCAGGAGACACTCTGATtgtagaagaagaaaagaacaaaCCAAAAGTCCAGACTAATGCTGCTCTAACAAAAGTCCCATGCCTAAATTCTTCTCCTGTTCTGGAGCGCCGAGTGGTTCCTGCTGACAACTCCTGCCTCTTTACGAGTGTGAACTACGTGGTGGAGGGGGGTGTGTATGATCCAGCCTGCGCACCCGAGATGCGCGGCCTTATCGCCCAGATCGTGGCCAGTGACGCAGCTGCCTATTCAGAGGCAGTACTGGGCAAAAGCAACGACGAATACTGCACCTGGATCCGGCGTGATGACACGTGGGGGGGTGCTATTGAGGTCTCCATCCTGTCCAAGTTTTACCAGTGCGAAATCTGTGTCGTGGACACGCAAACTGTTCGTGTGGACCGATTTGGCGAGGATGCTGGCTACCAGAAACGTGTCTTGCTTATTTACGACGGAATCCACTACGACCCGCTGCAGAGGGCAACGCCTGGCTCGGACATCCCACCGCAGACTGTCTTCTCCACTACCGACGACATCATCCTCGCGCAGGCCCTGGAGCTGGCTGACGAGGCAAGGAGCAAGCGGCAGTACACGGACGTCAACCGCTTCGCGCTGCGCTGCATGGTGTGCCAGACCGGCCTGGTGGGACAAAAGGAGGCGAGAGAGCATGCCAAGGAGACGGGTCACACCAACTTCGGCGAAGTGTAACAGTTCGCTTTGGATCACCTTTACTGTGCCCTCCCACTGCCACTCGGTATATGTTCTCACCTGAACCCAAACCCAAACTAATTCACAGTTGTGTGTCTCAGCTTGGTGCCGTTTTCTACCTCACAATGTGTTTTAACCCAAAACCCCCAACTTTTCAGTATTAATTACAACTCTTGGTCAACACTGGGTTTTTGACATTCTTGAGCATTACGTTTTGGTGTGTATTATCAGCACAGTATTGCAACaacacctttttatttttgatatgtAGCAATTGAGTTTATTGCCTAATGAGGAGTGAGCCTTTTATTCAAACCAAAATGTCAAACATTGCCTTCGTTATCAGTGTTTAAAACTTGCAACACTACTATTGCATAGTTGATAGCCTTGCTGTATTTGTCTGATTATTTCTTTTCTCAATTTTAAGGTTATATTGCACATTTCCGAACAATCGATGGCACTAAATGGTCTTAAAAGCTCACTGGCTCAATAATAACTGTTACTTGAAATAGTCGCAAAGATCAGACAGTGAGGAGCATTCTGTAgttgtttatgatttttttttttaacaggtagCTTCTCATGCATAAAGTATTTGAAAAGCATGGGTTGTAGTTTTAGTTAGGCTTCTGAGAGAGTGGATTGTGTAACAAATGGTGCTGATTGTGGActcacattataaacattatatagtATAGTGGTGTGGATTTATGTTTCAAACTgcactgtttttattgtttgtacaACTGGCCATGCAAAACACCTTTATGCAAGTGGCTACGAAATGTTTTTGCcaagatttattatttttctttccttcaGTGAAGAATTGTGTCATATCAGATTTTTTGAAGTGCTTGAAAACACTGGGGTAAATGTCGCTGGACTTGGTGACCTAGCCTAGTACAGTAAGTAGTATGAGTGGTTAaacaatacattaatacatagaATGTATTTTAGTGCTGGTGATAACTGGAAATACAATACATTTGCAGTCAGGTACTGTCCATGCAAGGCtttgtatgttattttattatttggagAGTGGGATTGGATGATGTTAAGCTTTAAACATCATCACTGAGCAGAGCTCTAAACAGGAAGTTAATGAAGTAATGGTTACACCATAAATAAAGGATGAATTGATACACCTGCTTGTTTCATTCAACAGGTAAGAGCTTCCATAAGCTTCATCATCTGTGGTGTTATTCTGGGATTGAATTATGCTGCAGTTGCAGAACACAacagtttatttactgtatttggcTTGATGTACATTAAGTGTCACTTGCTATCAACTACCTCTCTAATAAATCCCATTCAGATAAA

Function

symbol description
yod1 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in several processes, including endoplasmic reticulum unfolded protein response; protein deubiquitination; and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within proteolysis and response to unfolded protein. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human YOD1 (YOD1 deubiquitinase).

NR:

description
ubiquitin thioesterase OTU1

GO: NA

KEGG:

id description
K13719 OTU1, YOD1; ubiquitin thioesterase OTU1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251396.3 True 2365 mRNA 0.44 3 6983613 6987964

Neighbor

gene id symbol gene type direction distance location
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding upstream 100198 6852509 ~ 6883415 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding upstream 182144 6758208 ~ 6801469 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding upstream 259040 6704096 ~ 6724573 (+)
elk4 elk4,LOC108437624 coding upstream 657698 6305794 ~ 6325915 (+)
LOC103043323 LOC108437607 coding upstream 684708 6291800 ~ 6298905 (+)
LOC103039610 NA coding downstream 2976 6990940 ~ 7002012 (+)
LOC103038368 NA coding downstream 140201 7128165 ~ 7139038 (+)
LOC103037733 LOC108438636 coding downstream 219354 7207318 ~ 7210200 (+)
acot8 acot8,LOC107730625,LOC107670930,LOC107722006 coding downstream 358979 7346943 ~ 7353286 (+)
LOC103037081 srsf6,LOC107654800 coding downstream 366271 7354235 ~ 7360534 (+)
G187743 snrpe non-coding upstream 859 6978863 ~ 6982754 (+)
G187733 sox13 non-coding upstream 84870 6888272 ~ 6898743 (+)
G187731 NA non-coding upstream 96042 6884576 ~ 6887571 (+)
G187712 NA non-coding upstream 294220 6689020 ~ 6689393 (+)
G187710 NA non-coding upstream 318271 6665026 ~ 6665342 (+)
G187810 sh2d5 non-coding downstream 45176 7033140 ~ 7050338 (+)
G187844 NA non-coding downstream 176530 7164494 ~ 7164767 (+)
G187845 NA non-coding downstream 182450 7170414 ~ 7170650 (+)
G187848 NA non-coding downstream 201068 7189032 ~ 7189926 (+)
G187850 NA non-coding downstream 202093 7190057 ~ 7193359 (+)
p3h1 NA other upstream 1184634 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 3588770 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3981598 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5888276 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 6445397 510575 ~ 538216 (+)
LOC103029365 NA other downstream 89201 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 204190 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1124039 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1268832 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2295831 9283795 ~ 9819955 (+)

Expression


Co-expression Network