G187733 (sox13)


Basic Information

Item Value
gene id G187733
gene name sox13
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6888272 ~ 6898743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254590
TATTTACAACGGCTGGTTTTCCAACAGTAGACCAAATTatgacttcttttttttttttaatcagattttctaCAAGTCAGATACGAACAGTATCCGTTCCTATTTGAAGTTATGTACACACAAATCCAGCattctgtaaatgtaaatgccaGCTGATGATAGTCCAGTCTCTTCTATGCTTTCTTTAGTCacttaacttaaacttaaattattattattattatgctatttaaaacaaaaatcaaatctCTTTTCAGCTATAATGGCATTTTAGTCAAAACTTTAGCTCTGCTAGTGCTCCCACAGCGGGGGCACGGTCGTGAACGATGGATGAGGTGGAATGATGATTTAAAACAGTTACATACTCAAAACGCAAActcacactatatacacacacacagaaagtaaaagaaagTGTTGGGACAGAGCTGAGCGTCCTTTCAGAAATCTTTACGCTTTGCATATTTACATCCATGGGAATTTTTTTACTCCGGTGCACTGGTGAGGTGGTGAGTTgggttttgtataaaaaaaaatatgattgagggtttttttttgtggctaaAAGTGCATGTTTCATGTGTGCctcactttttttcattttcagttttttcacaACAACACTTAACGTTATCAAGATGGGCTGATAAGAAGAGATAAGCGATTGTTGAGAGATGTAATGAGCATTTGTATAAATTCCAGTGCAGTACCCATTCTAAACAGCAAGAGGGCGCCATCCACACTGAGACAGATGATCTCCGACAACAGATGGAGGCTGATTCGCAGTTTAAAGACAGAACTTTCAGCTGGATAGAAGTTGTTTATTTAGTTCAACAACAACTTAAATCTCAACTTCATCTCTTCACTCctttaactatttatttacttatttaattttaaacagagTATTACTTTGAAGCAAAAATTCTAAATCCAGTTTAAAAGCAATGATATttaggctgtgttcagactgccagctcaaatctgatttttggcaaACCTAAATTATGTCCAGATTGATTTTATAGTCTGGACTAGGGCTGCACAGTATATTGCTTTAGTATTGTCATCGCAATATGCTTATGAATATGCACTAGTCACATTAcagggtgtgcaatatcatgtgagatgtaaaataatgtcacataattcaaatattttgtcccttaaaacaaatagtatttttaaaaagtattcttgcaaaatgttaaaatctgtttggttttgacccaaaaaaaatcatttcccATCCTGCATACACAGAGTGCACATTAAAATTATAACATGTTAGATCACAGACTTTTGGTGAAATCTGGAAaagtctgtatttttttgtatcgcaagaagaaaatgaactgaaatgccACAGCCAAAAACTACATGAAATCACATTTGAAACTGTACAGATCTACATGCTCCAAAGGttagttactgttactgttactgatgCTGACCTCTTCTTGCAGATACGTTTGTGATGTCCAGAAAGGCAGATTCAATCTGATCGcttgcaaaaaaaattacagtgcaGACGTTCTTAACAGATCTtaacagatctgatttgagaaactaatctgatttgtctgcagtctgaacacagccttaGACACATGTTGATTCAGAGCTAAATTTCAGCAACTCTTAAGAACCTTTTTTGACTCTTTTTACAGCAAGAAGAGAGTTGAAGCTATGGCTCCAAAATAATTCCAGTTTACAGTCAATACGATTTATGCTAGATTTACTGCCAGGATGTGAATTTTTAGCTTAtttagattgtatccagatagatttttgatagtctggacAGCCAGAAACTACATTAAAATCTCATTTTGGCAAATCAGAACCAAATCCCAGTTGGAGGTGGTTTAAAATGCGATTGCAATCAATCatgtccagaaaaaaaaaaaaaaagaattAACAGATCTGATTTGGGAAACGAATCcgatttgcctgcagtctgaatACAGCCTTAAAGATTCCAGGGCATGaccagaaaattattttttttttccccattcccTTTTTCACCAGAGAAATTGTGtctgaaatgtttatttttctgctcTCCAGGCGTGGAAAGTACCTCGACTCACTCACAACAGGAACTCTAAGTAAAGGCAGGGGAAGTGTTTGCCGGAAAGCCTTGGTGACATTAACAATGGTAATATAGCGCAGGACCAAGCAAACAAGCCAAGCTTTCAGCCTAGCAGGTCTTAAAAGGGCAGTTCCACAAGTGcttacattttttgtaaaactgaataactaagatttaaaaaacatacaaagaTTGAAAATTATTCAGagtggtttggtgtgaaatgcacttttctagagAAAGAACTGTTGTTTATAGTATAAAACTGGTGAATAAAACTGGTCTGTTCACTtatgcactgtccactgtgggtagtaatgccttCTTCCATgttgtattcctggtacacacgtgacactgtggcTATCCCCCAAGAAGACATTTCGTGATCAATTTATATACTATCTCATGACTTTGGGCACATCAGTGCAAAAGTCTTgggctaaaatgtatttttttttttttttatatatatatatatttttttaagaacgtATCGTCTAAGACTCATATCATCCCTATTTTATCCTAGCTAATCGTCCATATAAAAGCACAGTAGATGTTTAGGGTCACTGGTGCCTTTggattgtaaataaaatagctgTATTTTTGTTGTAGACATCATGACATGATCATGACTGTTGTTGATTTTACATACAATTCATAATTTCACATAAACCCACTCTGAGCGCACAATTTTGCTACCATCTTTTTAACGTAAACTGTGTGTAGATTTTTGTTGAGAAAGtgatggaattttttatatgtatctaAACATGGAGGGGTATTTAAGCTATGAATTGGGTTTTACAGGCCTAAAAATGATTCAGGTGTTCAGCATAAAACATGCATTCTGCATGTGAGCCCCAGTTCTTGAAAAGTTTAGCAGGGAAACAAAAAGGTGAGGTTTGAGATTGCTGAAAGTTCAGTGTTTAGTGCTCAGAGGTTTATGTACATTcatcataaacataaaaatcgTGGCaatattggtattttaatttaatttctttaaacaGTTTCTTTTTGGGCAGAGTGAGCGCAATACAGTAGCAGTCAatcgtttggacacaccttttcatttaatgttttttattttttatagcttTCCTTACATAGTAAAATactatgtgaagcatttaggtgcccttatctggggagctgttaacttaacgtttctgaggctggtaatgcTAATTAACTtttcctgtacaacagaggaaactcttgctcttcctttcctgggactgtcctgatgagagccagtttaatcattaaatttttaaatggtctttgtgactgctcttgaggatactttcaaacttcattttttggattgactgaccgttttttaatagtatatttttcttttcttagttgagtagttcctgccataatattaataagttcagcacagcttttaactgaaagcctgaaatccAGGTGAGTCTACCTCATAAAGCAGCCAAGATGTTCAAAGCTGtttaatctaagcaagagatcctattttaaagaatctaaaataaaaaaacatattctggtttgtttaaaacttgtgtttttttgttcactaaataattccatatgtttttcttcacagttcagatgattttagtatttatGTACATTGCAGACAGttttaaactaacaaagaaacactgaatttaaggtccatccaaacttttgactggtactgtacatagtACACTTCTTCACTATCTTTcgaagacaaaaataaaaaaacaacaagaatcTGGTCAGTTAAATTTGTTGGTATAGTAAAAGTCGGCACTGAACCCGCTTTGACCTCACCGAGTCTACATATTACTGATAAAACGTCTGGGTTTCCAACAAGCTTAATGTTTATCCTGCTTGTTTTGGGACCACTGACCTGTTTTAATTCATATCTGTGTCCTCCTTCTTGATTACTCATTCCACTTGTTGCAATTAAGCCAGTTAGTTATACTGGCAGCAAAGCACACCTGGTGCATAATGCTGcctccaccaccatgtttaacagttggtaCAGTACTTTGAGGCTTAATGGTGGTAGTGGACACAGATAAACTACCAGATGTATCCAGTCATGATATTTAACAGAAATTAAGAGGCCTTGTCaagtaaaaaatatgataaatcaGAATCATAATAAATCTGATCATATTCAGTACTATAATGCTGAACTTAAATGCACAAATCTATAAACAACTGAGCACAACTGTAAATCAGCAAGTTACTGATTGTTACAGTGTGAGTTTTAGTCACGTGAATAAGATCCAATAAAACTAATAGAACTATAGAACAGTGACCTTTTCTTAATGCAGTATTATTTGGCTGCCTGAATTGCTTTATAGTCCATTACCATTAAGTCTGATTCCCAACGGTTTCACATTTATCCCTTtgacagaaataaacacaagaAATATGATGGTATTCTGCATTTTAAAGCCCTCTAAATGAAggtcttaaaataaaaagtctcAAGAGCTTGCCATGAATTATGGTCAACAATAGAAGCGTGTGAACGTTAGattataaaaacacagtaaaaccaaACCTTGATTTATTAGGCTTTGGTCAGGCTTCTCAACTAACTACAACTTCCCTGAACATCAGACATCGCTGCTGGAGTAAAATAACATATAGTCTATGTAACGCAAAGCTGCACTTCTCCGAGACCCTCAAACTGAACCACTTCAAAATAACCCCCACTGACCCCCCACACCCCAAAGTTTCCTCACTGCATGTACAGAAATTCCTCCCTGTCCCCTCTCTCTCAGTCAGTGAGGACCACCAGCTCCCCCTCGCTCCGCTCTCCTCCGTCGCTGTCCTCTCCCTCGCTGTAAGGCTGCTTGGCTCTGGCTTCCGGCTCGTCGTGGCCTCGGCCCTGCGGGGGCTCCAGGGGACGGGGCAGGtagtgctccagcagtgcaggGTGCAGGGGGAGGGCCATGGAGACCGGAGTGCTGGGGTACTGACCCTCAGCTGAGGGGTAATGCAGTtgctgctctga
>TU254591
cagcacagctgttaactgaaagcctgaattccagGTCTACCTCATAAAGCAGCCAAGATGTTCAAAGCTGtttaatctaagcaagagatcctattttaaagaatctaaaataaaaaaacatattctggtttgtttaaaacttgtgtttttttgttcactaaataattccatatgtttttcttcacagttcagatgattttagtatttatGTACATTGCAGACAGttttaaactaacaaagaaacactgaatttaaggtccatccaaacttttgactggtactgtacatagtACACTTCTTCACTATCTTTcgaagacaaaaataaaaaaacaacaagaatcTGGTCAGTTAAATTTGTTGGTATAGTAAAAGTCGGCACTGAACCCGCTTTGACCTCACCGAGTCTACATATTACTGATAAAACGTCTGGGTTTCCAACAAGCTTAATGTTTATCCTGCTTGTTTTGGGACCACTGACCTGTTTTAATTCATATCTGTGTCCTCCTTCTTGATTACTCATTCCACTTGTTGCAATTAAGCCAGTTAGTTATACTGGCAGCAAAGCACACCTGGTGCATAATGCTGcctccaccaccatgtttaacagttggtaCAGTACTTTGAGGCTTAATGGTGGTAGTGGACACAGATAAACTACCAGATGTATCCAGTCATGATATTTAACAGAAATTAAGAGGCCTTGTCaagtaaaaaatatgataaatcaGAATCATAATAAATCTGATCATATTCAGTACTATAATGCTGAACTTAAATGCACAAATCTATAAACAACTGAGCACAACTGTAAATCAGCAAGTTACTGATTGTTACAGTGTGAGTTTTAGTCACGTGAATAAGATCCAATAAAACTAATAGAACTATAGAACAGTGACCTTTTCTTAATGCAGTATTATTTGGCTGCCTGAATTGCTTTATAGTCCATTACCATTAAGTCTGATTCCCAACGGTTTCACATTTATCCCTTtgacagaaataaacacaagaAATATGATGGTATTCTGCATTTTAAAGCCCTCTAAATGAAggtcttaaaataaaaagtctcAAGAGCTTGCCATGAATTATGGTCAACAATAGAAGCGTGTGAACGTTAGattataaaaacacagtaaaaccaaACCTTGATTTATTAGGCTTTGGTCAGGCTTCTCAACTAACTACAACTTCCCTGAACATCAGACATCGCTGCTGGAGTAAAATAACATATAGTCTATGTAACGCAAAGCTGCACTTCTCCGAGACCCTCAAACTGAACCACTTCAAAATAACCCCCACTGACCCCCCACACCCCAAAGTTTCCTCACTGCATGTACAGAAATTCCTCCCTGTCCCCTCTCTCTCAGTCAGTGAGGACCACCAGCTCCCCCTCGCTCCGCTCTCCTCCGTCGCTGTCCTCTCCCTCGCTGTAAGGCTGCTTGGCTCTGGCTTCCGGCTCGTCGTGGCCTCGGCCCTGCGGGGGCTCCAGGGGACGGGGCAGGtagtgctccagcagtgcaggGTGCAGGGGGAGGGCCATGGAGACCGGAGTGCTGGGGTACTGACCCTCAGCTGAGGGGTAATGCAGTtgctgctctga

Function

symbol description
sox13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; forebrain neural keel; hindbrain neural plate; neural rod; and solid lens vesicle. Orthologous to human SOX13 (SRY-box transcription factor 13).

NR:

description
PREDICTED: transcription factor SOX-13 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254590 True 5108 lncRNA 0.37 3 6893575 6898743
TU254591 False 1600 lncRNA 0.41 3 6888272 6898743

Neighbor

gene id symbol gene type direction distance location
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding upstream 4857 6852509 ~ 6883415 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding upstream 86803 6758208 ~ 6801469 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding upstream 163699 6704096 ~ 6724573 (+)
elk4 elk4,LOC108437624 coding upstream 562357 6305794 ~ 6325915 (+)
LOC103043323 LOC108437607 coding upstream 589367 6291800 ~ 6298905 (+)
LOC103040557 yod1 coding downstream 84870 6983613 ~ 6987964 (+)
LOC103039610 NA coding downstream 92197 6990940 ~ 7002012 (+)
LOC103038368 NA coding downstream 229422 7128165 ~ 7139038 (+)
LOC103037733 LOC108438636 coding downstream 308575 7207318 ~ 7210200 (+)
acot8 acot8,LOC107730625,LOC107670930,LOC107722006 coding downstream 448200 7346943 ~ 7353286 (+)
G187731 NA non-coding upstream 701 6884576 ~ 6887571 (+)
G187712 NA non-coding upstream 198879 6689020 ~ 6689393 (+)
G187710 NA non-coding upstream 222930 6665026 ~ 6665342 (+)
G187703 NA non-coding upstream 357292 6530753 ~ 6530980 (+)
G187659 NA non-coding upstream 498899 6388517 ~ 6389373 (+)
G187743 snrpe non-coding downstream 80120 6978863 ~ 6982754 (+)
G187810 sh2d5 non-coding downstream 134397 7033140 ~ 7050338 (+)
G187844 NA non-coding downstream 265751 7164494 ~ 7164767 (+)
G187845 NA non-coding downstream 271671 7170414 ~ 7170650 (+)
G187848 NA non-coding downstream 290289 7189032 ~ 7189926 (+)
p3h1 NA other upstream 1089293 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 3493429 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3886257 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5792935 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 6350056 510575 ~ 538216 (+)
LOC103029365 NA other downstream 178422 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 293411 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1213260 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1358053 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2385052 9283795 ~ 9819955 (+)

Expression


Co-expression Network