RNA id: TU252478


Basic Information

Item Value
RNA id TU252478
length 1608
RNA type TUCP
GC content 0.37
exon number 6
gene id G186231
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 107396 ~ 115087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAGTTCACCGTAACACCTGCCATTCGGTACATCAACAGATCTGGACTTCGCTTCACGAATGTGCGACATGAGGGCAGAGATCTGCGAGACGCCACGTTTTCTGCTGCCTTTTACTGAGCGTTTCACAAAGAAATCGCAAGTTTGAtctctaatattattattattattaatatacatgtGATCTGTGACTTATTCTGGATTTGCACAAGCCTCTGCATAATCAACACAAACCCCATGTTTGCACTGAAACCCCGGATTTAAGGAATACTCCGTCCCCTCCCAGAAactttcccagcagtgtttaatgCTGATATAAAAAGCAGCAGCTTAGCTTTGATCGGAGCTGAAAGTACAGCTTGTCTTTTGTGTTTAACTCAACGTCCGGAGCGCTGGATCATTCCTGCCCTCTCTGCTCTCCTCCCGCCATGCTGGACTTCATAATAAACTGCACTCGCTCCGGCTGAACTGATCAACCGCTAAGTGGCTCTGGAAGGATATAAATGTCCCTGTGGGTAAAAAGTGCTCTGGAAACTGCTGGAGTTCAGATGACAGAAGATTATTGGAGAAAAAACCCACAGTAAAACAGAAGATGGCAAAagctgagtttaagcccaaaaaaataaaaactgagtttgataaaactgagaaaaagttgaaaaaaagaaaacaggatCCAGAGGACATTAAACCTAAAAGGATTAAGGATAAGaaaggacagagagaaacaaacGGCAAGAAGAAAGTAAAGAAGGAGCCTGAAGAAAAATGGAAGTGGTGCAAGAAGTTTGGAGTCCCTGTGGAGAAGATATACAACAAAACTCAACGTGAGAAATTTGCGTGGGCGATTGACATGGCGGAAGAAGAGTTTTAACACCTcctatattttattatgtgaTTTCCAGCAGGTGAGAAGTTCGACAAATAGGAAAAGTAAAATCATAGGCATTTCCTGCCTCCTTTTTTGCTTTTCCCCTTTTCCTCCCCTTTTCTTGTTCATCTCCTCTTCCTCCACTGGAGCACAAGTGAGCACATAGAtctttaaatgtttgaaatCTGGTGGTAAaacgtgtttgtttttttttacactgatttatttatttttttagaataaattagTTTTAGCTCGAAATATTCTATATTTGAATAGATATttaaaatctaatataatttgtcAAGTACGTCCCCAAGCCTTTTTAAGAGTATTTGCTCCTTGTGAGAGCTTGTAAGCAAAGAAGTGTTTTGTGCTGTTCTGACTCTTTTTTGGGAGAAAGTGTGAGATTTTCAGCAAACAATGTACATGTAATTTGATTTTAACCAGTTGTCTTAATAAGGAGAGAACTCTCTCTTATCTTACTTGAAGATATTGCTAAAATGATCTGTGTGATTTATCTGGATGGAAAAATGCATCTTACCAAAAGGTTATGATGGGATATCAACTTTGCCAAAAAACTTAACTCTTAATGAGGCAgtcctatttttttatatttaaattaaaaaaataaagggagtttaaacattaattttcttttaatgcTTGAATTCATCTCTGTatcatgatttatttaaaaatgtaaaatacacatGAGCATCAGTGTGTCTGTATCAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252445 lncRNA upstream 3532 26289 ~ 103864 (+) True G186215
TU252471 lncRNA upstream 9057 74730 ~ 98339 (+) True G186227
TU252475 lncRNA upstream 22528 77642 ~ 84868 (+) True G186230
TU252443 lncRNA upstream 80276 24507 ~ 27120 (+) False G186214
TU252444 lncRNA upstream 80276 24507 ~ 27120 (+) True G186214
TU252495 lncRNA downstream 62807 177894 ~ 178778 (+) True G186241
TU252524 lncRNA downstream 106029 221116 ~ 254030 (+) True G186264
TU252548 lncRNA downstream 178368 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 198873 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 307816 422903 ~ 423811 (+) True G186375
XM_022682823.1 mRNA upstream 17080 33445 ~ 90316 (+) True LOC103021578
XM_022682822.1 mRNA upstream 78638 22078 ~ 28758 (+) True LOC111195433
XM_022682821.1 mRNA upstream 86591 17629 ~ 20805 (+) True LOC111195432
XM_022682156.1 mRNA upstream 91718 2210 ~ 15678 (+) True LOC111195347
XM_007237514.3 mRNA downstream 425 115512 ~ 120431 (+) True fam83d
XM_007237515.3 mRNA downstream 6503 121590 ~ 127184 (+) False LOC103041710
XM_007237516.3 mRNA downstream 6672 121759 ~ 127184 (+) True LOC103041710
XM_007237518.3 mRNA downstream 26854 141941 ~ 145972 (+) True LOC103042533
XM_007237521.3 mRNA downstream 33229 148316 ~ 152658 (+) True LOC103043370
XR_002651586.1 other downstream 395488 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2865410 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3277300 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3808365 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4674889 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile