RNA id: XM_022682821.1


Basic Information

Item Value
RNA id XM_022682821.1
length 1564
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC111195432
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17629 ~ 20805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACCATCTCCTGGAGCTGACAGCCGTGGTAGCAACTCCTTACTTGGTACTGAAGACTTAGAGGAAATAATTCCATCACCAGCCCCTGTAAAATCTTCATCTAGAAAACGATCTAGGAACAGTACAGGCTGTGAGCCAAGAAAACATCAGACCATGGAAAGCTCATCAGAAGACTCAGACGAGGAGTCTGATTATACGGACTACAGTGACGTTGATTACATTCCAGGCACTGATCAAAGCTCATCTGATGAGTCCAAAAGAAGTCTGGAAGTGCAGCCTATTGCAAAAAAGCCTTTGCTTGTTCAAAGATTTCCCATGTTGTCATCAAAACAAGACAATACAGAGCATGCACAAAATCTCACTGCAAACAGCAGCACTATACATGTGTTGCCACCATCAAATTTAAAGGCTCAGAGGGTGTATGACAAGAGGAATTACTGTGTATTTTGCTTTAAGCCATCATCCAAAATTGCTCGCCATTTAGAAACAGTCCATCGAAATGAAGTGGAGGTAGCTCAAGCTGTTCAGTATCCAAAGGGTTCTAAAGCACGAAGAACAAAACTGAATATTCTGCGAAATCGGGGAAATTTTGTCCACAATGCTGAAGTTGTGAGAAAGGGAACAGGACAGTTAGTGGCATGTTACAGACCTCGAGAACAAAGGGATGCAAAAGATTTCATTCATTGTATTCATTGCCAAGGCCTTTATTCTAAACGGACTCTGTGGAGGCACATGAAAAATTGCCCGAAGAAGACACAAGATTCTGCTGATTCCCAGGTCTCAAGAAAGCGTGTTAGATCTCTGTGTGCTCTTGCAAATCCAGTTGGTCGGGATATAAGTGAGGGCTTAAAAAGGGTTCTGTCTCAAATGACCTATGATGATGTTTACCGCTCTGTCCAAAATGATAAGTGTATTCTGCAGTTCGGAGAACACATGTTCAATCGGCATGGGTCAGATGTTAACAAGCATGATTACATACGCCAGAAAATGCGTGAAGTAGGAAGACTTCTCCTGGAAGCTCAAAAATTAACCCCACTGAAAACAATGGAAGACTTTATCATACCTGCTAACTTCTCGCATGTTGTTTCTGCAGTGAAAATGGTGGCTGGATTCAATCCTGAAAAGAACACCTACCGCATTCCTTCACTGGCCCTCAAGCTTGGCCACAGTCTACAGAAGATCTGTAGTATAGTTGAAAGTAATGCTATGATATGTGGGAACCAAACCATGGCAGAACAAGCTAAGAACTTCAGGATCATACACCAGGCCAGGTGGAACGAGTTTGTCTCTGCAGGTGCAATAACAACTCTCAAGGAAGCCAAGTGGAATGTCCCACAGATTTTACCATTCACAGAAGATGTAAAGCTTTTGAATGCTTACCTGGAAAAGAAACAAGATGAGTATGAGAGAGAACTAAGAATAATCCCAACTGCAGATAACTACGGTTCCCTGGCTAAGGTAACACTTGCGTTAGCAATCATCTTCAATAGGAGAAGAGCAGGAGAAGTGTCAAGAATGGATATGTCTGCGTTCATGTCACGAAATAATGCAGAAACTACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651584.1 lncRNA upstream 9340 7195 ~ 8289 (+) True LOC103022234
TU252443 lncRNA downstream 3702 24507 ~ 27120 (+) False G186214
TU252444 lncRNA downstream 3702 24507 ~ 27120 (+) True G186214
TU252445 lncRNA downstream 5484 26289 ~ 103864 (+) True G186215
TU252471 lncRNA downstream 53925 74730 ~ 98339 (+) True G186227
TU252475 lncRNA downstream 56837 77642 ~ 84868 (+) True G186230
XM_022682156.1 mRNA upstream 1951 2210 ~ 15678 (+) True LOC111195347
XM_022682822.1 mRNA downstream 1273 22078 ~ 28758 (+) True LOC111195433
XM_022682823.1 mRNA downstream 12640 33445 ~ 90316 (+) True LOC103021578
XM_007237514.3 mRNA downstream 94707 115512 ~ 120431 (+) True fam83d
XM_007237515.3 mRNA downstream 100785 121590 ~ 127184 (+) False LOC103041710
XM_007237516.3 mRNA downstream 100954 121759 ~ 127184 (+) True LOC103041710
TU252478 other downstream 86591 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 489770 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2959692 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3371582 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3902647 3923452 ~ 3923662 (+) True LOC111195456

Expression Profile