RNA id: TU252475


Basic Information

Item Value
RNA id TU252475
length 217
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G186230
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 77642 ~ 84868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaagatagcgatgaacgtctgactgttggtgtctgtctaggttgtattcagtcagtggagctcctgtgttttctgttaccaagataaacaagataaaactccagaaatgtacctgaacacacctcatttccagaacaccacgcccatcagtgtagatatattcagaagatctgctgctgtttaaaccagacaggaggatgATAGATAGTGATGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252443 lncRNA upstream 50522 24507 ~ 27120 (+) False G186214
TU252444 lncRNA upstream 50522 24507 ~ 27120 (+) True G186214
TU252435 lncRNA upstream 53711 17550 ~ 23931 (+) True G186211
XR_002651584.1 lncRNA upstream 69353 7195 ~ 8289 (+) True LOC103022234
XR_002651649.1 lncRNA downstream 22213 107081 ~ 109174 (+) True LOC103041000
XR_002651651.1 lncRNA downstream 28522 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA downstream 28932 113800 ~ 114346 (+) False LOC111195451
TU252495 lncRNA downstream 93026 177894 ~ 178778 (+) True G186241
TU252524 lncRNA downstream 136248 221116 ~ 254030 (+) True G186264
XM_022682822.1 mRNA upstream 48884 22078 ~ 28758 (+) True LOC111195433
XM_022682821.1 mRNA upstream 56837 17629 ~ 20805 (+) True LOC111195432
XM_022682156.1 mRNA upstream 61964 2210 ~ 15678 (+) True LOC111195347
XM_007237514.3 mRNA downstream 30644 115512 ~ 120431 (+) True fam83d
XM_007237515.3 mRNA downstream 36722 121590 ~ 127184 (+) False LOC103041710
XM_007237516.3 mRNA downstream 36891 121759 ~ 127184 (+) True LOC103041710
XM_007237518.3 mRNA downstream 57073 141941 ~ 145972 (+) True LOC103042533
XM_007237521.3 mRNA downstream 63448 148316 ~ 152658 (+) True LOC103043370
TU252478 other downstream 22528 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 425707 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2895629 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3307519 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3838584 3923452 ~ 3923662 (+) True LOC111195456

Expression Profile