RNA id: TU252524


Basic Information

Item Value
RNA id TU252524
length 1106
lncRNA type read_through
GC content 0.40
exon number 2
gene id G186264
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 221116 ~ 254030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATAACGGAGATAACAGGAGGAGCCCGGCGGTGAAGGGGTTGTGATTGGGTGGTTAGATAGGGAGGAGGGGCTTCAGGCAGGGCTGAACAGACTGATAGTAAACTGATAGATAAGGTAATAAATCAGGTGATGTGCTGCAGGGCGGGGAATGTTTATATAACTGGTTTAGTTGAGTTAAACGCGGCGGTGGCCGAGCGATCAGGTTAGTAATTATTCGGTCATGAGGACGGGTTCTTAATTCTTCTGAGGGTCCAGATGATCCAGACCTGTTCAGAACTTCTGATCCAGATGTTTTGTTCTGGACGTCGGTCTAGAGTCTGTCAGTCGttcttaaactttaaaactttacattaattttgtttggttcgttttctttaggtttaatatctgcattttgtttattgtgaaaaaatattgtttatggTGAAACCTTAAACTATGTTTTGATAAAGTAATATATAGTGCTAtgactattaaaataaataaatattaatgctAGGACTAACATGTGGATACAGGTGAGGTTTGTCCATCTGCAGAAACTCACTTTGCACTTTTAAATGTACTTCTATTCGCCTTCATTTACAAAGAAAATGAAAGTTTACAATCATACTGACTAATATATAAGATGTCTATATAAATTAGTCTAAACTGCCATTGAAATAAACCccacatgtttttaattaatacataaaagAGTTTCCTGCTTAAATCATTTTTCATCATTAATTTACCGACGTTCAGGTTTGTGTTTATAATCTGGTTCTGATTCAGAGGAAAGAGGACGGGCTGAAGTCGGCGTTTTCTCTGACGTGGTTGAGGTGGTTCATGGCGCGTTCGTACGCCGTGTTCACCGACTTCCTCACGTTACGCTTCTTCCCCTCCATCAGCCGGAGCTTATCCACCGTATCATCCACTCCCATCGGATGGAGCTTATCCAGCGGCAGCCACTGCCTGAGAACCACAACACcagaatcaatcaatcaatcaatcaatcaatttccCCCAGATTCAGTTACAATAAGAGATCTTCTGTGGAGTTAGGAGGTTAATGTAGCATTGTCCACTGTGTAGCGCAGCCTTTAGCCTAAAAACCTTCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252495 lncRNA upstream 42338 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 106770 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA upstream 106770 113800 ~ 114346 (+) False LOC111195451
XR_002651649.1 lncRNA upstream 111942 107081 ~ 109174 (+) True LOC103041000
TU252471 lncRNA upstream 122777 74730 ~ 98339 (+) True G186227
TU252548 lncRNA downstream 39425 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 59930 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 168873 422903 ~ 423811 (+) True G186375
TU252714 lncRNA downstream 241674 495704 ~ 498408 (+) True G186385
TU252734 lncRNA downstream 304922 558952 ~ 563539 (+) True G186401
XM_022682167.1 mRNA upstream 2656 200368 ~ 218460 (+) True LOC103044480
XM_022682166.1 mRNA upstream 2656 202824 ~ 218460 (+) False LOC103044480
XM_007237530.3 mRNA upstream 30759 183848 ~ 190357 (+) True LOC103045901
XM_022682169.1 mRNA upstream 30759 184112 ~ 190357 (+) False LOC103045901
XM_022682159.1 mRNA upstream 46634 167342 ~ 174482 (+) True LOC103025463
XM_007237534.3 mRNA downstream 15720 269750 ~ 278183 (+) True LOC103047032
XM_007237535.3 mRNA downstream 15720 269750 ~ 278183 (+) False LOC103047032
XM_022682174.1 mRNA downstream 17169 271199 ~ 278183 (+) False LOC103047032
XM_022682176.1 mRNA downstream 188434 442464 ~ 457409 (+) True lactbl1
XM_022682177.1 mRNA downstream 188434 442464 ~ 457409 (+) False lactbl1
TU252478 other upstream 106029 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 256545 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2726467 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3138357 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3669422 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4535946 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile