LOC103045901 (LOC108440326,LOC108255043,LOC107727863,LOC107685673,LOC107598432)


Basic Information

Item Value
gene id LOC103045901
gene name LOC108440326,LOC108255043,LOC107727863,LOC107685673,LOC107598432
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 183848 ~ 190357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237530.3
AATAGTGAAGGAGGAGGGCGGGATTAGATGGAGTAGGAGTAGGGAAGGTGTAGATTGGCGGAGAGcggtattttattattgattatagaTTAATAATCACTTTATCAGAACCACCGTAAGCCCGAGCCCCGGTCTGCAGCGCGCTAACGGCCCGCCGGTCCgcccgagagagagagcgcagcccGCGGGGTGATCTCAGACCGTGTCCCGCAGCCGCTCAGCGGGGATGGACAGTGAGTTGTCAGACATGGATCACACTCCAGCTCTGGATAACAGCAGCATGGAGGAGGAGAACGCTCCGCTCTACTGCATCTGTCGGAAACCAGATATCAACTGTTTTATGATCGGCTGCGACAGCTGTAACGAGTGGTTTCATGGTCACTGTATAAACGTAACGGAGAAGATGGCCAAAGCTATCAGAGAGTGGTACTGCAAGAGATGCCaagACAAGGACCCGTCTCTAGAGATCAAATATCGATCCAAGAAGAATCGAGAAAAGGACGGAGAAATTCACCGAGCTGAGAAACGCTCCAGTACTCCAGACTTCAAACTGGAAAAACGCAGAGGATCTAAAGTGAAGCGTTCAGCGCGGATGTGTGGTGAGTGTGAACCCTGCCGGCGCACCGAGGACTGCGCTCAGTGTGATTTCTGCAAAGATATGAAAAAATTTGGAGGCCCAAACAAAATCCGTCAGAAATGTCGACTGAGGCAGTGTGTCGTTCGCGCTCGGAAAATGCTGCGAGTGCGGGATGAGGAGTTATCTCTGCGCGAGAGGAGGGATAATATAATGCACAGACGATACTCGGACGAGTTCGACGGGAACGAGATGGAGCTGTTCCAGCAGTACAAAGAGCAGAACCTGATGTGGGGCAGTGAGGACGAGGACGTCCCGGTGTTCAGTCCGGTCCGCCGCAAAAAAGCTATTAAAGTCAAACATGTTAAACGCAGAGAGAAGAAATTTGACAAAAAGAAAGAGTCCCGGCGtcacaaacagaaacagaagcatAAAGaccggattcggcacaacagccgAGTGGACGGGCGGCAGGTCGGTGATTTACACCAGTGTCTCGGGCCGAACTGCATCGAGGCGGCGCGACCCAACTCCAAATACTGCTCTGAGGACTGCGGCATGAAACTCGCAGCCAAccGGATATACGAGATTTTGCCGCAGCGGATCCAGCAGTGGCAGCAGAGTCCGTGTGTGGCGGAGGAGCAGGGCAGGAAGCAGCTGGAGCGAATCAGACGCGAGCAGCAGGCCGCCCGCCTTCGCCTCGCCGAGATGGAGCGCCGCTTCCACGAGCTGGAGGGAATCATCGCCAAGGCCAAGCAGCAGGACGTGCAGCAGGACGAGGAGGTGAGTGAAACTGAGGGCGAGGACACGGACCTGCAGATCTTCTGTGTGTCCTGCAGTCACCCCATTAACCCCAAAGTGGCGCTGCGTCATATGGAGCGCTGCTACGCCAAGTATGAGAGTCAGACGTCGTTTGGATCTATTTTCCCGACGCGAATTGAAGGGGCGACGAGGCTGTTCTGTGATGTTTATAATCCTCAGAGTAAAACTTACTGTAAGAGGCTTCAGGTTTTGTGTCCGGAACATTCCAGAGACCCGAAGgtgccGGTGGATGAGGTGTGCGGGTGTCCGTTAGTGAGGAACGTGTTTGAGGAGTCGGGGGAGTTCTGCAGGGTCTCGAAGAGGAAGTGTAATAAACATTACTGCTGGGAGAAACTgaggagagcagaggtggaTCTGGAGCGCGTCAGAGTGTGGTATAAGCTGGACGAGCTGTTTGAGCAGGAGCGAAACGTCCGGACGGCGATGACCAACCGAGCCGGACTCCTCGCGCTGATGCTGCACCAAACCATCCAGCACGACCCGCTCACCACCGACCTGCGCAGCAACAAGGACCGATAACCTGCAGCCGCCTCCGTTTATTAATATCTGTATTAATTCAGGAAGAATTCACTAAAACTCACTTTCTTCACGTCTTTATTCCGTCTCTCTCTGTAGATTTGATCCTCTGGACTTTTCTCTTTATCGTTTACAGGGAGAGTTAACTGATCCCGAGTTTATGATGTGTAAAGATTTCTATCAGAATTttgatgtaaataaattgtttgTTTAGAGATTGAATTTGTGATCATATGTTTAGTTTGTATAAACTCAGATACAGTTTAGATGTTGTAAAGTGACTTTTCTGAAATTATAATCTGAGATTAAAGTGTTTTCTACAGTAACTGCA
>XM_022682169.1
CGCTTTATACAAACAGAgaaatctataatctataaactataaaatctATTAACTATAATctataattgtgattaatctcCGGACTGTGCGGATTTATATTCTTCCTGCGGGACAGTGAGTTGTCAGACATGGATCACACTCCAGCTCTGGATAACAGCAGCATGGAGGAGGAGAACGCTCCGCTCTACTGCATCTGTCGGAAACCAGATATCAACTGTTTTATGATCGGCTGCGACAGCTGTAACGAGTGGTTTCATGGTCACTGTATAAACGTAACGGAGAAGATGGCCAAAGCTATCAGAGAGTGGTACTGCAAGAGATGCCaagACAAGGACCCGTCTCTAGAGATCAAATATCGATCCAAGAAGAATCGAGAAAAGGACGGAGAAATTCACCGAGCTGAGAAACGCTCCAGTACTCCAGACTTCAAACTGGAAAAACGCAGAGGATCTAAAGTGAAGCGTTCAGCGCGGATGTGTGGTGAGTGTGAACCCTGCCGGCGCACCGAGGACTGCGCTCAGTGTGATTTCTGCAAAGATATGAAAAAATTTGGAGGCCCAAACAAAATCCGTCAGAAATGTCGACTGAGGCAGTGTGTCGTTCGCGCTCGGAAAATGCTGCGAGTGCGGGATGAGGAGTTATCTCTGCGCGAGAGGAGGGATAATATAATGCACAGACGATACTCGGACGAGTTCGACGGGAACGAGATGGAGCTGTTCCAGCAGTACAAAGAGCAGAACCTGATGTGGGGCAGTGAGGACGAGGACGTCCCGGTGTTCAGTCCGGTCCGCCGCAAAAAAGCTATTAAAGTCAAACATGTTAAACGCAGAGAGAAGAAATTTGACAAAAAGAAAGAGTCCCGGCGtcacaaacagaaacagaagcatAAAGaccggattcggcacaacagccgAGTGGACGGGCGGCAGGTCGGTGATTTACACCAGTGTCTCGGGCCGAACTGCATCGAGGCGGCGCGACCCAACTCCAAATACTGCTCTGAGGACTGCGGCATGAAACTCGCAGCCAAccGGATATACGAGATTTTGCCGCAGCGGATCCAGCAGTGGCAGCAGAGTCCGTGTGTGGCGGAGGAGCAGGGCAGGAAGCAGCTGGAGCGAATCAGACGCGAGCAGCAGGCCGCCCGCCTTCGCCTCGCCGAGATGGAGCGCCGCTTCCACGAGCTGGAGGGAATCATCGCCAAGGCCAAGCAGCAGGACGTGCAGCAGGACGAGGAGGTGAGTGAAACTGAGGGCGAGGACACGGACCTGCAGATCTTCTGTGTGTCCTGCAGTCACCCCATTAACCCCAAAGTGGCGCTGCGTCATATGGAGCGCTGCTACGCCAAGTATGAGAGTCAGACGTCGTTTGGATCTATTTTCCCGACGCGAATTGAAGGGGCGACGAGGCTGTTCTGTGATGTTTATAATCCTCAGAGTAAAACTTACTGTAAGAGGCTTCAGGTTTTGTGTCCGGAACATTCCAGAGACCCGAAGgtgccGGTGGATGAGGTGTGCGGGTGTCCGTTAGTGAGGAACGTGTTTGAGGAGTCGGGGGAGTTCTGCAGGGTCTCGAAGAGGAAGTGTAATAAACATTACTGCTGGGAGAAACTgaggagagcagaggtggaTCTGGAGCGCGTCAGAGTGTGGTATAAGCTGGACGAGCTGTTTGAGCAGGAGCGAAACGTCCGGACGGCGATGACCAACCGAGCCGGACTCCTCGCGCTGATGCTGCACCAAACCATCCAGCACGACCCGCTCACCACCGACCTGCGCAGCAACAAGGACCGATAACCTGCAGCCGCCTCCGTTTATTAATATCTGTATTAATTCAGGAAGAATTCACTAAAACTCACTTTCTTCACGTCTTTATTCCGTCTCTCTCTGTAGATTTGATCCTCTGGACTTTTCTCTTTATCGTTTACAGGGAGAGTTAACTGATCCCGAGTTTATGATGTGTAAAGATTTCTATCAGAATTttgatgtaaataaattgtttgTTTAGAGATTGAATTTGTGATCATATGTTTAGTTTGTATAAACTCAGATACAGTTTAGATGTTGTAAAGTGACTTTTCTGAAATTATAATCTGAGATTAAAGTGTTTTCTACAGTAACTGCA

Function

NR:

description
PREDICTED: CXXC-type zinc finger protein 1-like isoform X1

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0001568 blood vessel development biological_process
GO:0032776 DNA methylation on cytosine biological_process
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237530.3 True 2243 mRNA 0.51 14 183848 190357
XM_022682169.1 False 2124 mRNA 0.49 14 184112 190357

Neighbor

gene id symbol gene type direction distance location
LOC103025463 tfe3b,tfe3,LOC108440327,LOC105912251,LOC106582876 coding upstream 9366 167342 ~ 174482 (+)
gnl3l gnl3l coding upstream 17082 160870 ~ 166766 (+)
LOC103042837 LOC108440330,LOC108440331 coding upstream 24304 157172 ~ 159544 (+)
LOC103043370 LOC103043370,LOC108440332 coding upstream 31190 148316 ~ 152658 (+)
LOC103042533 LOC103042533 coding upstream 37876 141941 ~ 145972 (+)
LOC103044480 si:dkey-13a21.13,LOC108444173 coding downstream 10011 200368 ~ 218460 (+)
LOC111195348 grm6b,LOC108444164,LOC107564587,LOC107691362,LOC107749460,LOC107597884 coding downstream 31470 221827 ~ 241725 (+)
LOC103046213 mon1bb,LOC108444170,LOC107564673,LOC107727858,LOC107691359,LOC107749456 coding downstream 52915 243272 ~ 248887 (+)
LOC103047032 si:dkey-183j2.10,LOC108444168,LOC107565113,LOC107685669,LOC107727882,LOC107749458,LOC107597793,LOC107691358 coding downstream 79393 269750 ~ 278183 (+)
lactbl1 lactbl1,lactbl1b,LOC107727874,LOC106582988 coding downstream 252107 442464 ~ 457409 (+)
G186241 NA non-coding upstream 5070 177894 ~ 178778 (+)
LOC111195451 NA non-coding upstream 69502 113390 ~ 114346 (+)
LOC103041000 NA non-coding upstream 74674 107081 ~ 109174 (+)
G186215 NA non-coding upstream 79984 26289 ~ 103864 (+)
G186264 NA non-coding downstream 30759 221116 ~ 254030 (+)
G186279 NA non-coding downstream 103098 293455 ~ 294062 (+)
G186368 NA non-coding downstream 123603 313960 ~ 340818 (+)
G186375 NA non-coding downstream 232546 422903 ~ 423811 (+)
G186385 NA non-coding downstream 305347 495704 ~ 498408 (+)
G186231 NA other upstream 68761 107396 ~ 115087 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other downstream 320218 510575 ~ 538216 (+)
podxl2 NA other downstream 416476 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2790140 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 3202030 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5589534 5779891 ~ 5798979 (+)

Expression


Co-expression Network