RNA id: XM_007237530.3


Basic Information

Item Value
RNA id XM_007237530.3
length 2243
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC103045901
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 183848 ~ 190357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAGTGAAGGAGGAGGGCGGGATTAGATGGAGTAGGAGTAGGGAAGGTGTAGATTGGCGGAGAGcggtattttattattgattatagaTTAATAATCACTTTATCAGAACCACCGTAAGCCCGAGCCCCGGTCTGCAGCGCGCTAACGGCCCGCCGGTCCgcccgagagagagagcgcagcccGCGGGGTGATCTCAGACCGTGTCCCGCAGCCGCTCAGCGGGGATGGACAGTGAGTTGTCAGACATGGATCACACTCCAGCTCTGGATAACAGCAGCATGGAGGAGGAGAACGCTCCGCTCTACTGCATCTGTCGGAAACCAGATATCAACTGTTTTATGATCGGCTGCGACAGCTGTAACGAGTGGTTTCATGGTCACTGTATAAACGTAACGGAGAAGATGGCCAAAGCTATCAGAGAGTGGTACTGCAAGAGATGCCaagACAAGGACCCGTCTCTAGAGATCAAATATCGATCCAAGAAGAATCGAGAAAAGGACGGAGAAATTCACCGAGCTGAGAAACGCTCCAGTACTCCAGACTTCAAACTGGAAAAACGCAGAGGATCTAAAGTGAAGCGTTCAGCGCGGATGTGTGGTGAGTGTGAACCCTGCCGGCGCACCGAGGACTGCGCTCAGTGTGATTTCTGCAAAGATATGAAAAAATTTGGAGGCCCAAACAAAATCCGTCAGAAATGTCGACTGAGGCAGTGTGTCGTTCGCGCTCGGAAAATGCTGCGAGTGCGGGATGAGGAGTTATCTCTGCGCGAGAGGAGGGATAATATAATGCACAGACGATACTCGGACGAGTTCGACGGGAACGAGATGGAGCTGTTCCAGCAGTACAAAGAGCAGAACCTGATGTGGGGCAGTGAGGACGAGGACGTCCCGGTGTTCAGTCCGGTCCGCCGCAAAAAAGCTATTAAAGTCAAACATGTTAAACGCAGAGAGAAGAAATTTGACAAAAAGAAAGAGTCCCGGCGtcacaaacagaaacagaagcatAAAGaccggattcggcacaacagccgAGTGGACGGGCGGCAGGTCGGTGATTTACACCAGTGTCTCGGGCCGAACTGCATCGAGGCGGCGCGACCCAACTCCAAATACTGCTCTGAGGACTGCGGCATGAAACTCGCAGCCAAccGGATATACGAGATTTTGCCGCAGCGGATCCAGCAGTGGCAGCAGAGTCCGTGTGTGGCGGAGGAGCAGGGCAGGAAGCAGCTGGAGCGAATCAGACGCGAGCAGCAGGCCGCCCGCCTTCGCCTCGCCGAGATGGAGCGCCGCTTCCACGAGCTGGAGGGAATCATCGCCAAGGCCAAGCAGCAGGACGTGCAGCAGGACGAGGAGGTGAGTGAAACTGAGGGCGAGGACACGGACCTGCAGATCTTCTGTGTGTCCTGCAGTCACCCCATTAACCCCAAAGTGGCGCTGCGTCATATGGAGCGCTGCTACGCCAAGTATGAGAGTCAGACGTCGTTTGGATCTATTTTCCCGACGCGAATTGAAGGGGCGACGAGGCTGTTCTGTGATGTTTATAATCCTCAGAGTAAAACTTACTGTAAGAGGCTTCAGGTTTTGTGTCCGGAACATTCCAGAGACCCGAAGgtgccGGTGGATGAGGTGTGCGGGTGTCCGTTAGTGAGGAACGTGTTTGAGGAGTCGGGGGAGTTCTGCAGGGTCTCGAAGAGGAAGTGTAATAAACATTACTGCTGGGAGAAACTgaggagagcagaggtggaTCTGGAGCGCGTCAGAGTGTGGTATAAGCTGGACGAGCTGTTTGAGCAGGAGCGAAACGTCCGGACGGCGATGACCAACCGAGCCGGACTCCTCGCGCTGATGCTGCACCAAACCATCCAGCACGACCCGCTCACCACCGACCTGCGCAGCAACAAGGACCGATAACCTGCAGCCGCCTCCGTTTATTAATATCTGTATTAATTCAGGAAGAATTCACTAAAACTCACTTTCTTCACGTCTTTATTCCGTCTCTCTCTGTAGATTTGATCCTCTGGACTTTTCTCTTTATCGTTTACAGGGAGAGTTAACTGATCCCGAGTTTATGATGTGTAAAGATTTCTATCAGAATTttgatgtaaataaattgtttgTTTAGAGATTGAATTTGTGATCATATGTTTAGTTTGTATAAACTCAGATACAGTTTAGATGTTGTAAAGTGACTTTTCTGAAATTATAATCTGAGATTAAAGTGTTTTCTACAGTAACTGCA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0001568 blood vessel development biological_process
GO:0032776 DNA methylation on cytosine biological_process
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252495 lncRNA upstream 5070 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 69502 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA upstream 69502 113800 ~ 114346 (+) False LOC111195451
XR_002651649.1 lncRNA upstream 74674 107081 ~ 109174 (+) True LOC103041000
TU252471 lncRNA upstream 85509 74730 ~ 98339 (+) True G186227
TU252524 lncRNA downstream 30759 221116 ~ 254030 (+) True G186264
TU252548 lncRNA downstream 103098 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 123603 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 232546 422903 ~ 423811 (+) True G186375
TU252714 lncRNA downstream 305347 495704 ~ 498408 (+) True G186385
XM_022682159.1 mRNA upstream 9366 167342 ~ 174482 (+) True LOC103025463
XM_007237522.3 mRNA upstream 17082 160870 ~ 166766 (+) True gnl3l
XM_007237519.3 mRNA upstream 24304 157172 ~ 159544 (+) True LOC103042837
XM_007237521.3 mRNA upstream 31190 148316 ~ 152658 (+) True LOC103043370
XM_007237518.3 mRNA upstream 37876 141941 ~ 145972 (+) True LOC103042533
XM_022682167.1 mRNA downstream 10011 200368 ~ 218460 (+) True LOC103044480
XM_022682166.1 mRNA downstream 12467 202824 ~ 218460 (+) False LOC103044480
XM_022682171.1 mRNA downstream 31470 221827 ~ 239739 (+) True LOC111195348
XM_022682170.1 mRNA downstream 39660 230017 ~ 241725 (+) False LOC111195348
XM_007237531.3 mRNA downstream 52915 243272 ~ 248887 (+) True LOC103046213
TU252478 other upstream 68761 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 320218 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2790140 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3202030 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3733095 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4599619 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile