LOC111195451


Basic Information

Item Value
gene id LOC111195451
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 113390 ~ 114346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651650.1
aaactgagaaaaagttgaaaaaaagaaaacaggatCCAGAGGACATTAAACCTAAAAGGATTAAGGATAAGaaaggacagagagaaacaaacGGCAAGAAGAAAGTAAAGAAGGAGCCTGAAGAAAAATGGAAGTGGTGCAAGAAGTTTGGAGTCCCTGTGGAGAAGATATACAACAAAACTCAACGTGAGAAATTTGCGTGGGCGATTGACATGGCGGAAGAAGAG
>XR_002651651.1
ACTCCGCCCCTGACTTCATTGTGCTTACcttttcatttgtagctccgcccccttgttacccggTCCCAGATGTTTCCTGTCCCCGTCCCTGTGTACATATTGTCCCCCTTGTTTCAGCGTCGCTCGTCCGTGTTTATACGTTTTAATATCAGTCGTGTTTTGTGTTCCCCTGTTGTCTATGTTATCTGTGTTTCTTTTCgtttcagtttttgtttctttgtctgattataatattaatttaaataaatacccaCAAGTGTGTCCGCTCTACACGTCTCCTTCCTGCTCCCTACCGGACACTTGCCTTAAAGGTGTAGAAAAATGcagtttattctatttttttctaataaacgttcacctttttttcagagctgagtttaagcccaaaaaaataaaaactgagtttgataaaactgagaaaaagttgaaaaaaagaaaacaggatCCAGAGGTATGAGCATAGGGACATTAAACCTAAAAGGATTAAGGATAAGaaaggacagagagaaacaaacGGCAAGAAGAAAGTAAAGAAGGAGCCTGAAGAAAAATGGAAGTGGTGCAAGAAGTTTGGAGTCCCTGTGGAGAAGATATACAACAAAACTCAACGTGAGAAATTTGCGTGGGCGATTGACATGGCGGAAGAAGAG

Function

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651650.1 False 227 lncRNA 0.40 3 113800 114346
XR_002651651.1 True 650 lncRNA 0.40 3 113390 114346

Neighbor

gene id symbol gene type direction distance location
LOC103021578 ephb2,ephb2b,LOC108439490,LOC107685632,LOC102781222 coding upstream 23074 33445 ~ 90316 (+)
LOC111195433 NA coding upstream 84632 22078 ~ 28758 (+)
LOC111195432 NA coding upstream 92585 17629 ~ 20805 (+)
LOC111195347 NA coding upstream 97712 2210 ~ 15678 (+)
fam83d NA coding downstream 1166 115512 ~ 120431 (+)
LOC103041710 LOC103041710,LOC108440336 coding downstream 7244 121590 ~ 127184 (+)
LOC103042533 LOC103042533 coding downstream 27595 141941 ~ 145972 (+)
LOC103043370 LOC103043370,LOC108440332 coding downstream 33970 148316 ~ 152658 (+)
LOC103042837 LOC108440330,LOC108440331 coding downstream 42826 157172 ~ 159544 (+)
LOC103041000 NA non-coding upstream 4216 107081 ~ 109174 (+)
G186215 NA non-coding upstream 9526 26289 ~ 103864 (+)
G186227 NA non-coding upstream 15051 74730 ~ 98339 (+)
G186230 NA non-coding upstream 28522 77642 ~ 84868 (+)
G186214 NA non-coding upstream 86270 24507 ~ 27120 (+)
G186241 NA non-coding downstream 63548 177894 ~ 178778 (+)
G186264 NA non-coding downstream 106770 221116 ~ 254030 (+)
G186279 NA non-coding downstream 179109 293455 ~ 294062 (+)
G186368 NA non-coding downstream 199614 313960 ~ 340818 (+)
G186375 NA non-coding downstream 308557 422903 ~ 423811 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other downstream 396229 510575 ~ 538216 (+)
podxl2 NA other downstream 492487 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2866151 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 3278041 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5665545 5779891 ~ 5798979 (+)

Expression


Co-expression Network