RNA id: XM_022682171.1


Basic Information

Item Value
RNA id XM_022682171.1
length 2937
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC111195348
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 221827 ~ 241725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCATCGTGTCGCGCGGCTCCTCTGCATCTCCTCGGAGAAATCAAACCCGGTTTGGACTAGAATTCTCCCTGAAACCGGTTTGGACTTTAATCTGGTTTAAAGTGAGAGGAGAAGAGTTTTGGATCGGTTTTGCGGATGGAGGAGGAGAGCGGTGCTGCCGGAGCGCAGCCTGAGGATCCACAGGTAAAGCTTCTCCACCACATCAGAGGAGAGTGTCAGGAGGCCTGGAAGCAGCCATGATGCCTCAGCTGGGCAGAGCTGGACCACACCcatgttttagatttttctttctGGTCCATTTCTTCTGCATCCTGCTGCTGGCGCCAGCCGCAGGGTCCCGCGGGTCGTCGGCCTCTTCGGGAACGCAGCCGCACTCCATAAAGATAGAGGGCGACATCACGCTGGGCGGCCTGTTTCCGGTGCACTCGCGAGGACCCGCGGGCGTGCCCTGTGGAgatattaaaaaagagaaagggatTCACCGGATGGAAGCCATGCTTTACGCTCTCGACCAGATCAACAGCGACCCGGACCTGCTGCCCAACATCACGCTCGGAGCGCGGATCCTGGACACCTGCTCCAGAGACACCTACGCTTTGGAGCAGTCCCTAACCTTTGTCCAGGCGCTCATCCAAAAGGACAATTCAGACGTTCGCTGCTCCAACGGAGAGCCGCCAATCATTCCCAAACCTGAGCGAGTGGTGGGGGTGATCGGAGCCTCGGCCAGCTCTGTGTCCATCATGGTTGCCAATGTGTTACGCCTTTTTGCAGTTCCCCAAATCAGTTATGCTTCCACGGCTCCAGAGCTGAGTGATAACAACCGCTACGACTTCTTCTCCCGCGTGGTTCCTCCAGACTCCTTCCAGGCCCAGGCCATGGTGGACATTGTGAAGGCCATGGGCTGGAACTACGTCTCCACCCTGGCCTCAGAGGGAAACTACGGCGAGAGCGGAGTGGATGCTTTCCTTCAGATCTCCAGAGAAGCAGgGGGTCTCTGTATCGCCCAGTCTATTAAAATTCCTCGAGAGCCGAGACCCGGAGAATTCGACAAAATCATTAAGAGATTAATGGAGACGTCAAACGCCAGAGGAGTAATTATCTTCGCTAATGAAGATGATATTAAGCGTGTCCTTGAGGCAGCAAAGAGAGCCAATCTCACAGGTCACTTCCTGTTTGTGGGCTCTGATAGCTGGGGGTCCAAAATCGCCCCCATCCTGGACCAGGAGGACGTGGCAGAGGGAGCCGTCACCATCCTGCCCAAGAGAGCATCAATAGAGGGTTTTGACCAGTACTTTACCTCTCGCTCTCTGGAAAACAACAGGAGAAACATCTGGTTTGCAGAATTCTGGGAAGATGATTTTAAATGCAAGTTGACTCGTCCAGGAATTAAACTAGATGGTGGACAGAGGAAGTGTACAGGAGAGGAGCGGATCGGAAGGCATTCTCCGTACGAACAGGAGGGAAAAGTGCAGTTTGTGATCGATGCGGTTTATGCCATGGCTCACGCGCTCCACAGCATGCACATCGACATGTGCCCCGGATCCACAGGGATCTGCGACAGCATGGACCCGGTGGAGGGAAAACTCCTGCTGAAGTACATCCGCGCCGTCAACTTCAACGgcagtgcggggaCCGGGGTAATGTTTAATGAGGACGGGGACGCTCCGGGTCGATACGATATCTTCCAGTACCAGCTCTCCAACACCACCAACCCTGGATACAAAAACATCGGCCAGTGGACCAATCACCTGCGGCTCAGCGCGGAGGACATGCAGTGGTCTGGGGGAGATAAGGCGGTTCCGGACTCGGTCTGCAGTTTTCCGTGTGAGTCGGGCGAGAGGAAGAGGATGGTGAAGGGCGTGCCGTGCTGCTGGCACTGCGAGCTGTGCGACGGATATCAGTTCCTGCTGGACGAGTTTAACTGCGACACCTGTCCGTTCGACATGCGGCCCACGCCCAACCGCACCGGCTGCAGGCCTACGCCCATCATCAAGCTGGAGTGGAGCTCGCCCTGGGCCATCATTCCCGTGTTCCTGGCCGTCCTGGGCATCCTGGCCACCACCGGCGTCATCGTCACCTTCGTCCGCTTTAACGACACGCCGATCGTCCGCGCGTCCGGCCGCGAGCTCAGCTACGTCCTGCTGACGGGGATCTTCCTCATCTACCTCATCACCTTCCTGATGATCGCGGAGCCCGGAGCGGTGGTGTGCGCTTTCCGCCGCCTGCTGCTCGGACTCGGCATGTGTATCAGCTACTCCGCCATGCTCACCAAAACCAACCGCATCTACCGCATCTTTGAACAGGGCAAGAAATCTGTGACTCCGCCCAAATTCATTAGTCCCACCTCCCAGCTCATCATTACATTCATCCTCATCTCAGTGCAGTTGTTGAGTATTTTTATCTGGTTCGGAGTGGTTCCTCCTCACACCACCATCGACTTCGAGGAGCAGCGCCCCCCGAACCCCGAGCTGGCCCGCGGGATCCTGAAGTGCGACATGTCCGAcctgtctctgattggctgtctcagtTACAGCATGGTGCTGATGGTCACGTGCACAGTTTACGCCATAAAGAGCCGCGGCGTTCCCGAAACCTTCAACGAAGCAAAACCCATCGGCTTCACCATGTACACCACCTGCATCATCTGGCTGGCTTTCGTCCCCATCTTCTTCGGAACGGCTCAGTCCACAGAGAAGATGTTCATCCAGACGACCACACTGACCGTATCCATGAGCCTGAGCGCCACCGTCTCGCTCGGCATGCTCTACATCCCCAAAGTCTACGTCATCATCTTCCACCCGGAGCAGAACGTGCAGAAGAGGAAGCGCAGCTTTAAAGCTGTGGCTCAAGCGGCCGCCGCCTCCTCCCGCCTCTCGCAGAAATCCAGCGACAAACAGAACGGAGAGACCAAGGTGGAACCCGACCGCTCGCAGTGA

Function

GO:

id name namespace
GO:0007196 adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001642 group III metabotropic glutamate receptor activity molecular_function

KEGG:

id description
K04608 GRM6; metabotropic glutamate receptor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252495 lncRNA upstream 43049 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 107481 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA upstream 107481 113800 ~ 114346 (+) False LOC111195451
XR_002651649.1 lncRNA upstream 112653 107081 ~ 109174 (+) True LOC103041000
TU252475 lncRNA upstream 136959 77642 ~ 84868 (+) True G186230
TU252548 lncRNA downstream 53716 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 74221 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 183164 422903 ~ 423811 (+) True G186375
TU252714 lncRNA downstream 255965 495704 ~ 498408 (+) True G186385
TU252734 lncRNA downstream 319213 558952 ~ 563539 (+) True G186401
XM_022682167.1 mRNA upstream 3367 200368 ~ 218460 (+) True LOC103044480
XM_022682166.1 mRNA upstream 3367 202824 ~ 218460 (+) False LOC103044480
XM_007237530.3 mRNA upstream 31470 183848 ~ 190357 (+) True LOC103045901
XM_022682169.1 mRNA upstream 31470 184112 ~ 190357 (+) False LOC103045901
XM_022682159.1 mRNA upstream 47345 167342 ~ 174482 (+) True LOC103025463
XM_007237531.3 mRNA downstream 3533 243272 ~ 248887 (+) True LOC103046213
XM_007237534.3 mRNA downstream 30011 269750 ~ 278183 (+) True LOC103047032
XM_007237535.3 mRNA downstream 30011 269750 ~ 278183 (+) False LOC103047032
XM_022682174.1 mRNA downstream 31460 271199 ~ 278183 (+) False LOC103047032
XM_022682176.1 mRNA downstream 202725 442464 ~ 457409 (+) True lactbl1
TU252478 other upstream 106740 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 270836 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2740758 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3152648 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3683713 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4550237 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile