RNA id: XM_022682166.1


Basic Information

Item Value
RNA id XM_022682166.1
length 5333
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC103044480
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 200368 ~ 218460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGTTAACCTGAGCGGCGGAGTGGGAGGAGCTTCGTCGTGAATCCTCTCGGTCTGCTCGCGCTTCGACCTTCCGTGCGCCGCTGCACCGGCCCGCTGTGTTGTGTaggcgggtgtgtgtgtgtgtgtgtgcgcgcgcgtgctGCTGCAGTGAAGAACggatctgtttttttctggaacAGAGAGGATGATAACGCTGCGCTGCGGGGCGTCTTCATGTCTGCCagGTCGGCATTAAGCTGCCAGTGTTGATCTGCACAACATCCTGAGTCACGACCTATGGAGGTCAAAGGTCACCTGATCACTGCCATGGGTTTAGGGTCTCCAGAGGTGCAGGACAGTAAGCTGCAGGCTGAGAGGGTCTCGGAGCTTCAGGAGAGGAAGGAGACGCTGCAGACGCTCCTGAGTTCTCGACTCGGGGAACTGAGACAGATGTGTGTTCTGGAGGCGGAGCTGACGGGGAAGTTATCCCGAGATTTTCCGCTGGAAGTGGGAGAAAGACCCCCGTTTGTTCAGCGCAGAGCCGGACTCGCCCCCACCAAATCAGAGGATGACGCTGGACAGCGCCGGCAGATGAAGACGCTCTTCGGCGGCGCTCTTCGCCGGAATATGGAGTCTGATAAAACCGGATTTCACAACAAGAGAACCGTTCACCGCGGCTGCCATACAGAGGACACGGTTAAATCAGAGAGCAGTTCCTTATCGGACTCCATTCCGTCCCAAGACAACGAGGACTCCTCACCGAGTGTGTTTCCTGAGCACCGCTCCCTCTCTCACCCCCGGTTGGCCCCTGGGAGCCCGGAGTGCCGCCTGAGCCGGAAACTTTCTCCAGTAGAGATTTATTACGAGATGAGAACTCGCCGTAACTCTGCGTCCAGCTCCGTCAGcccaAGCCACTCCCTGCCGAGAAGTGCATCTAATGTGGAGGGCCGGAGTGTTCCAGCCACGCCCCTTCTGTCCAGAACTGCACCAATCAGCATTCACATGagGTCGGACGTGTCGAGCAGTGTGGTTCTAAAGCCGTGGGGCGACAGTCCGGACGTCCCGCAGTTCGTGCCGTTGGAGAGCTCGCTGTCCTCCTCGGAGCGGCGCGGTTGTCCGTACGGGTCCCGGGCTCGCCGCAGTAACAGCTCAGAGGCGCTGCTGGACCGATCCAACCTGCCCGAGTCCGGCATGCCCTCCAGAGCCGGACCCTACAAGAGCTCCGAGTCCCTGACGGACGGGAAGCTCAGGCAGCTGTACCGCGGGAGTCCGGAGAGGCAGCCGGGCAGCGCCGGCGAGCAGCCGGGACGAGTGCGCTCGTCGGTGGGCAGCAGGGGGAGTGGCCTGGGTTACAGCGAGATTCTAATGGACTACATCTGGGGGAAACCGCAGAAACGGCCAGTTCAGCACCAGCAGCCGCAGCCTCCAGTCTGGCCTGATCTCTCCGCCTTCCCTGTTCCTGtATCCGGCACCCCTCCCCACTATAATGGTTTCTCCCATTCCCAAATCCACCTGGCCTCGGCCCCGCCCCCCTACAGCCCCATGATCCTGCGGGACCAGCCGGCCGAACCTCGCCGCATTAAAGTCACCCGGACCAAATCCTGCGGCCCCTTTATTCCCCTTCAGCAGCACCCGCAGGACCCGGTCCTGCTCTCCGCCTACGAGCCGCACCCCCCGCCCGGCTCCGCCGCCGCTGCAGAGCTGCCCGCGGTGTTTACCCGCCGGCTTGCGCCGTTCCCCCTGCCCTCGCCCGATGACTCCACCCGCAGCCTGCACAAAGCCCTGGCGCTGGAGGGCCTGCGGGACTGGTACCTGAGGAACGCTTTGGGTTACAGCGCCCCCAAAGGGCACGACGGGCTGCCCCTGCGCCACGCCCACCACCTGCTGCACCAGCCCCAGTCCGTTCCCCTGGACCCGCTCTACGCCCACCCCCACATCCCGCAGTCGGCGTCCTTCCACGGCCACCCGCTGCACGGCAGATCTGTGGAGCTCTCTCTCTACCCAGAACCATTTCCCTCCAAGGAGAACGTCCAGAAGGAGGCGAGCGCTGACCCTGCTGCTCCAGGGACTCTGGTATAGATCCACACTTTCCGCAGCGCAGAGCTCCTCCGGTCTTCAGAGTACGAACTGAGCCCTGTCATATAAATACATCCTGATATAAACAGTACTTATGAATTATATTCTATTACAGAGGTACATTTGCATATGATTTGGGCATTAAAATATACAGAGCTCATCTTCGTTTCATCTTCAGATATATATTTtcgcaaaaataaataatatagataaaatgtatgtatcaaAAATGACTATTTTGTAAGTAACAATGTTCAGGTGAACAGTCATTTGAAAAAAAGACATAATTCtacattaaatttaataaactcatcgcatttaaatgtattatagcAGCTGTGAATGTGTAGCATatctattgttttaaatatctatatatgtaGCTTATAACAAGTGCGATGTATCATAAACACAAGCTGTAAAACAGAAAGAACCTCAGAACTAAAGGAACTGAGGAAAACTGGATTTCAGGTTGCAAAAGTAATGAACCCCACTAAAAGTAATACACTTgatttcaaataattatttttttttccatccagtaaatttattgtaaagttaacaaacaaaacacttaaTATGCAGATTCTGGTGCAAAATGGAACAATGCATATTTAGCTCATATGAGGGGCTTTAATAATCAAACCAACaacatatttatgtttttcattttctttaaaatatgtgCTGCAGATATAAagcctttattatttttagatgattttgtttcttttttattattattagatgaGTTAATAGACAATACatgtcaattatttatttatctttaatccacaaaatatttttaagagggttgaatacttttgcaagcagTGCAGCTGAAGTGAGTTTAGTAAGTTTGGTCCAGAAAAATGTAGCAGGTATTTTTTTACGTACAGCCTCATTAATAAAATGTCTTAATATTTAGATTTTGCTGCATTATTATGCACAGTTTGTTAAAGAGGAAACGTTTACAGAAAATCATCAGTAAATCAGTTTATTGATGTTTATGTAAATCAGCCGATCCTGCAGGAGCTGATTTAGAGTCAGAACAGCTGAATGTAGACTCTGGTTTTGGGACCtcgaaaaatatatattacctCAAAACCCGTGAGCAGAAGATCTCAGTCTGTGATCGTTAATCTGTCGCATGTTTAACAGCGTGGTGAAACGCGGTGGTGAAACGCGGTGGTGAAACGCGGTGATGTTAGTTTTCACTGTCTGAAGGTTCAGGTGAGCTGTAGATCTGTTCTCACCTGAGCTGATGTTATCTTTCTGCATCCGCCAGCTAACAGGTAAcgttataaaaacatttagaaacgTTCTGAGAAGATCAGAGGAAGGTTCGTCTGTTTCAGAAGTAAATAAAGCCTGATAACGATTTGCTTCACAACATTATTAGACCGTTTTTCACATCACGCTTCCAGCTGGAAGAATACTAAAattatgaaaacaattaaggaacaTTCTCAAAACTACAACTTGAAATATTTAACTCACATTTTGTGAATCATCAAAGAAGTATAaatcctttatttaattttattttcttgggTAAAACTTTAGCACTAAATCTGCTCTCTTGCTTCAGCTGAGGCTGAAAAATCTGATTATGTTGCTTTTTTACCAAACAGATTAAAAATCGACTAAAATCCTGAATAAATTCTAAAGAGACGATTCTGCTGTTCTGCCCGTTTAACTTCAGTCAGACCGGAAACAAAACACCAACACCAacgagcgagtgtgtgtgtgtgtgtgtgtgttacctggtAATAAACCACTTTAATTAGGCAATTTACATCTGAAGGTAATTATCTAATCATCGCTATGGAAACGGTAAAGTGtaaaccctggttttaatccagttttagttttggtgttttatttcagtgttcagCAGTTTTTCTGAGTTGATGGTAAGAAAAGTATGAGCAGGTCTTATACCAGATCTCCATCcgtactattttttatttgttttaactgGTTTATTTTTGGCTGTAATCTGTTTAATTAGTTTGtgaactatatatttatatcagacatttatatacatttttttgcctTAGGTTATGGTACTCCATCtttatttttcctgttttaaagattttaatatgtaattttatgTAATTCCATGATGCAGTTTTTACTGCATGAGGTAACTGAGTTTAAATGCAGTATTATAAACAAACAGTTAAACAGCTGATAATAAATTTCTGTAGCatttaactttttctttttcatttctctGAGTTATGTTCAGTGAAATATGTAAGAGATATGCAGAACAGATGCTCTCTGATTGGTCTGTTAGTTTATCTGCTGTTGTGGGATTGgaaaagctaaatgttaaaggaCTGAATCCAGATTCTGCAGGTTCTGAACTTTATTCAGGAGCGGTTTTCTGTTTATTGGATTTACTCACATTTAGTTCACTCCTTTGGGTCgttcttaatatatttttttaagatattttgaGGGATGATATTTTCTCAAACAAACCCAATCTGATAAATCTGATAACTCTAATTGTAACTGGCCTTCCAAATAGCTGAGAAAATGtggtttaataaaaacagtggGTTTAAGCTTCTCCATGTTCACGGCTGTTCTGAGTGTAGAATCACAGAAATattaagacttttatttttgaaatctAAAGAGCACGGATTGGTCCATCGCTTTGAGAACTGCTGCGTTTCTGCATTAAAATGAAGGTTTAAGTTCAGAAAATGAAAGTTATGTATTTCTGGTTTGTTCTTTTTCAGAAAGTGAAagatattgttttatatttctctgtttttctttggtCAGTGTTTAGTGCCTCCAGCTATTAGAACTGAACCCTGAAGACCAAACCGCTGTGGGAGTCTGTTCTCGTGTAGACTTCAGTTTCAGTGACTGTctttactgtatgtaaatatttaaagaaaaatacattaatcaacttgaataaaaagtaaatatatatatatatatatatatatatatattgtatatttatgtatactgTAGTGTGTTTACACCAGCAGAATGGAAACTCATGGCTTTACGATATGAACTAATCTAGTTTGCAGCAGGCCGACCACTGTTTACCATTTTTTACTCAGAAAtgctttacaatattttttatttctcattgtaaaagttatattgttatattgctgttattattgtttatattgctGTTATATTGCCCATTTTAAGTAAATAACAATGGCttgcacattatatatatatatgggattATATTCATTCATAATAAAGATTCATATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252495 lncRNA upstream 24046 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 88478 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA upstream 88478 113800 ~ 114346 (+) False LOC111195451
XR_002651649.1 lncRNA upstream 93650 107081 ~ 109174 (+) True LOC103041000
TU252475 lncRNA upstream 117956 77642 ~ 84868 (+) True G186230
TU252524 lncRNA downstream 2656 221116 ~ 254030 (+) True G186264
TU252548 lncRNA downstream 74995 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 95500 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 204443 422903 ~ 423811 (+) True G186375
TU252714 lncRNA downstream 277244 495704 ~ 498408 (+) True G186385
XM_007237530.3 mRNA upstream 12467 183848 ~ 190357 (+) True LOC103045901
XM_022682169.1 mRNA upstream 12467 184112 ~ 190357 (+) False LOC103045901
XM_022682159.1 mRNA upstream 28342 167342 ~ 174482 (+) True LOC103025463
XM_007237522.3 mRNA upstream 36058 160870 ~ 166766 (+) True gnl3l
XM_007237519.3 mRNA upstream 43280 157172 ~ 159544 (+) True LOC103042837
XM_022682171.1 mRNA downstream 3367 221827 ~ 239739 (+) True LOC111195348
XM_022682170.1 mRNA downstream 11557 230017 ~ 241725 (+) False LOC111195348
XM_007237531.3 mRNA downstream 24812 243272 ~ 248887 (+) True LOC103046213
XM_007237534.3 mRNA downstream 51290 269750 ~ 278183 (+) True LOC103047032
XM_007237535.3 mRNA downstream 51290 269750 ~ 278183 (+) False LOC103047032
TU252478 other upstream 87737 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 292115 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2762037 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3173927 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3704992 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4571516 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile