RNA id: TU252694


Basic Information

Item Value
RNA id TU252694
length 419
lncRNA type inter_gene
GC content 0.27
exon number 2
gene id G186375
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 422903 ~ 423811 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccagtcttacacactgcttttggataactttatgctgctttactcctgcactgtaaaaaaaaaaaatgtaaaaaaacggTAGAATGTCTGGCAGCAAAAGTTGCCAAACAATTACCATAAAATTACAGGAAATTACTGTACCTAATTTAACAACGActtcttgtaaaattacagctttttcTTGTATATGttctctgtaattttacagtCAAAGAATAgtaaattacatgtttttttctgttgttaaacattcctaaaatgttaaaataacctataaaatactgcattaatacattaaaagtcTGTTATCTGAAGGTTGACATCAATTAAATAATGGTATAATTATGTTACTTGAGAGAATTATTCAAGCAATTTACAGCATAGAAATGTCAAATTACAtggtttttaaagtaaaaaaa

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252687 lncRNA upstream 82085 313960 ~ 340818 (+) True G186368
TU252548 lncRNA upstream 128841 293455 ~ 294062 (+) True G186279
TU252524 lncRNA upstream 168873 221116 ~ 254030 (+) True G186264
TU252495 lncRNA upstream 244125 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 308557 113390 ~ 114346 (+) True LOC111195451
TU252714 lncRNA downstream 71893 495704 ~ 498408 (+) True G186385
TU252734 lncRNA downstream 135141 558952 ~ 563539 (+) True G186401
TU252737 lncRNA downstream 135588 559399 ~ 561512 (+) True G186402
TU252733 lncRNA downstream 137943 561754 ~ 563539 (+) False G186401
TU252750 lncRNA downstream 191507 615318 ~ 626377 (+) True G186409
XM_007237534.3 mRNA upstream 144720 269750 ~ 278183 (+) True LOC103047032
XM_007237535.3 mRNA upstream 144720 269750 ~ 278183 (+) False LOC103047032
XM_022682174.1 mRNA upstream 144720 271199 ~ 278183 (+) False LOC103047032
XM_007237531.3 mRNA upstream 174016 243272 ~ 248887 (+) True LOC103046213
XM_022682170.1 mRNA upstream 181178 230017 ~ 241725 (+) False LOC111195348
XM_022682176.1 mRNA downstream 18653 442464 ~ 457409 (+) True lactbl1
XM_022682177.1 mRNA downstream 18653 442464 ~ 457409 (+) False lactbl1
XM_022682179.1 mRNA downstream 46252 470063 ~ 472044 (+) True LOC111195351
XM_007251508.3 mRNA downstream 51584 475395 ~ 492764 (+) True smarcd1
XM_007251509.3 mRNA downstream 71262 495073 ~ 505040 (+) True gpd1
TU252478 other upstream 307816 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 86764 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2556686 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2968576 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3499641 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4366165 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile