RNA id: TU252737


Basic Information

Item Value
RNA id TU252737
length 242
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G186402
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 559399 ~ 561512 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacgatCACACGATCACAcgatcacacaatcacacaatcACACGATAACACGATCACAcgatcacacaatcacacaatcacacgatCACAcgatcacacaatcACACGATAACACGATCACACGATCACAcgatcacacaatcacacaatcacacgatCACACGATCACACGATCACACGATCACAcgatcacacaatcacacaatcacacgatAACACGATCACACGATCACACGATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252714 lncRNA upstream 60991 495704 ~ 498408 (+) True G186385
TU252694 lncRNA upstream 135588 422903 ~ 423811 (+) True G186375
TU252687 lncRNA upstream 218581 313960 ~ 340818 (+) True G186368
TU252548 lncRNA upstream 265337 293455 ~ 294062 (+) True G186279
TU252524 lncRNA upstream 305369 221116 ~ 254030 (+) True G186264
TU252733 lncRNA downstream 242 561754 ~ 563539 (+) False G186401
TU252750 lncRNA downstream 53806 615318 ~ 626377 (+) True G186409
TU252751 lncRNA downstream 65200 626712 ~ 628123 (+) True G186410
TU252742 lncRNA downstream 67837 629349 ~ 632261 (+) False podxl2
TU252743 lncRNA downstream 67837 629349 ~ 1095337 (+) True podxl2
XM_007251504.2 mRNA upstream 15869 541330 ~ 543530 (+) True bcdin3d
XM_022682180.1 mRNA upstream 21183 510587 ~ 538216 (+) False cers5
XM_007251509.3 mRNA upstream 54359 495073 ~ 505040 (+) True gpd1
XM_007251508.3 mRNA upstream 66635 475395 ~ 492764 (+) True smarcd1
XM_022682179.1 mRNA upstream 87355 470063 ~ 472044 (+) True LOC111195351
XM_022682184.1 mRNA downstream 7671 569183 ~ 577902 (+) True LOC103029902
XM_007251499.3 mRNA downstream 21286 582798 ~ 585804 (+) True ccdc51
XM_007251500.3 mRNA downstream 21316 582828 ~ 585804 (+) False ccdc51
XM_007251501.3 mRNA downstream 25710 587222 ~ 601007 (+) False mcm2
XM_015606393.2 mRNA downstream 26740 588252 ~ 601007 (+) True mcm2
XR_002651586.1 other upstream 21183 510575 ~ 538216 (+) True cers5
TU252478 other upstream 444312 107396 ~ 115087 (+) True G186231
TU253378 other downstream 2418985 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2830875 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3361940 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4228464 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 5585173 6146685 ~ 6147519 (+) True LOC111195362

Expression Profile