RNA id: XM_022682156.1


Basic Information

Item Value
RNA id XM_022682156.1
length 1413
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC111195347
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 2210 ~ 15678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGAACAAGGAGAACACTCTGTTAGTTGCATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGAACAAGGAGAACACTCTGTTAGTTGTATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGATGTATGCAGAAACTCCCATGAGTCACATTGTGAGGGATAAGCAGACCGTTTCTTCACGTCAGACAAAAGGAAGGACTAGGTCACTCGAAAGGCCTCTTGGAATTACAGAGCGTAAGGAACAAGGAGAACACTCTGTTAGTTGCATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGAACAAGGAGAACACTCTGTTAGTTGTATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGAACAAGGAGAACACTCTGTTAGTTGTATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGATGTATGCAGAAACTCCCATGAGTCACATTGTGAGGGATAAGCAGACCGTTTCTTCACGTCAGACAAAAGGAAGGACTAGGTCACTCGAAAGGCCTCTTGGAATTACAGAGCGTAAGGAACAAGGAGAACACTCTGTTAGTTGCATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGAACAAGGAGAACACTCTGTTAGTTGTATCCAGAAGAGCCCTGAGACAGACTGCTCTTCCTGCCCAGTTATAGACGAGGACAGTTCACAGGACAAGCCTTTGGGTGCTGCAGAAAACCAGGTATAAACATGGTTTACCAAGATCTACCATAACACGTCTGCCTTCCTACAGGGCTGTCCCCAGTGTGAGATATGTCGAGTGTATGTGTATGCTTGGTGTCCCCAGTTGTAGAGTTGTTGATAAGCATGGATGGATATGAGATGGCCGTGGTCCAGATCGTCCCCGATCTGTTCTAagagtttgtgtatgtgtgtccagTGACCCCAGACTCCCTGTAGAGCTCCAATTGTTGTCTTGTTGCCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252435 lncRNA downstream 1872 17550 ~ 23931 (+) True G186211
TU252443 lncRNA downstream 8829 24507 ~ 27120 (+) False G186214
TU252444 lncRNA downstream 8829 24507 ~ 27120 (+) True G186214
TU252445 lncRNA downstream 10611 26289 ~ 103864 (+) True G186215
TU252471 lncRNA downstream 59052 74730 ~ 98339 (+) True G186227
XM_022682821.1 mRNA downstream 1951 17629 ~ 20805 (+) True LOC111195432
XM_022682822.1 mRNA downstream 6400 22078 ~ 28758 (+) True LOC111195433
XM_022682823.1 mRNA downstream 17767 33445 ~ 90316 (+) True LOC103021578
XM_007237514.3 mRNA downstream 99834 115512 ~ 120431 (+) True fam83d
XM_007237515.3 mRNA downstream 105912 121590 ~ 127184 (+) False LOC103041710
TU252478 other downstream 91718 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 494897 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2964819 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3376709 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3907774 3923452 ~ 3923662 (+) True LOC111195456

Expression Profile