RNA id: TU252445


Basic Information

Item Value
RNA id TU252445
length 702
lncRNA type read_through
GC content 0.38
exon number 3
gene id G186215
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 26289 ~ 103864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttattgCTATATAGGCTACCTTTGAAAttacataatatacataattcACATAATCATTGTCTCCAAAAATAGCATGCAGTGaacatacagattttttttccagtaagcCAAAGACACCCAGGTGATACTGACACtagctttaatataaaaaaaacgtgtaaaacCTTTAGACCTTCTGCACGTTCTcCAAAGACACCCAGGTGATACTGACACtagctttaatataaaaaaaacgtgtaaaacCTTTAGACCTTCTGCACGTTCTCCAAAGAACAGATGATTTTGATAATATAACAAAAGCATTAGTGCAGGAATGTAACTGAAAAATACACATGAGAACTTTACTTCATCTGTCCCCAAAGTTTAGTAAAAGTATTCAAAAGTGACTTTTATCAGAGTTTGTGTACGTGTATGGGATTGGCCCCCAAATGTGTCCTAAAAAATACAAGTCCTCAAATGTGTGGTATTATGTCACCTCGGACAAAATATGCTTGAATCAAAAATATCAAGTGATTGTGGTGTTATTGGGGTATTTTGGAGCAGAACTGTGTTGTCTGCTTCTCTCTAGCTCATTCAGAAAGCGGTGTCCCCGCGGTGGGGGCTTCTTTTCATATGGCCTCAAATGTGTCCTaagacagtatgtgtgtgtgtgtgtgtgtgtgtggttgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252435 lncRNA upstream 2358 17550 ~ 23931 (+) True G186211
XR_002651584.1 lncRNA upstream 18000 7195 ~ 8289 (+) True LOC103022234
XR_002651649.1 lncRNA downstream 3217 107081 ~ 109174 (+) True LOC103041000
XR_002651651.1 lncRNA downstream 9526 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA downstream 9936 113800 ~ 114346 (+) False LOC111195451
TU252495 lncRNA downstream 74030 177894 ~ 178778 (+) True G186241
TU252524 lncRNA downstream 117252 221116 ~ 254030 (+) True G186264
XM_022682821.1 mRNA upstream 5484 17629 ~ 20805 (+) True LOC111195432
XM_022682156.1 mRNA upstream 10611 2210 ~ 15678 (+) True LOC111195347
XM_007237514.3 mRNA downstream 11648 115512 ~ 120431 (+) True fam83d
XM_007237515.3 mRNA downstream 17726 121590 ~ 127184 (+) False LOC103041710
XM_007237516.3 mRNA downstream 17895 121759 ~ 127184 (+) True LOC103041710
XM_007237518.3 mRNA downstream 38077 141941 ~ 145972 (+) True LOC103042533
XM_007237521.3 mRNA downstream 44452 148316 ~ 152658 (+) True LOC103043370
TU252478 other downstream 3532 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 406711 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2876633 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3288523 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3819588 3923452 ~ 3923662 (+) True LOC111195456

Expression Profile