rbm15b (rbm15b)


Basic Information

Item Value
gene id rbm15b
gene name rbm15b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 1371719 ~ 1378558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251542.3
CGCTCCCATTgtccaagatggcggcgcgggTGCAGCTTCTGTGATGCTGGTGTTTTCGGTGCGTTTGTTTGATGTTTTCCCGCTGAAGCTCCGTCCCCGTATCTCTCTCCGCGTCCGGCGGAACGCGCGTGACGCCCATCGCTCGCGCGGCGTGAGCGCGCGGTGCGGACCGGAGCTGTTTGGTGTCGCCCCGGTTTTTTTTCCTCCGCCGCCAAAAGTTTGCAGGGAGGAGGATGAAGCGGCAGGCCGAGCGGGACACGAGCCCGGCGCGAGCTGCCGCCAAACGGATCCgggagcgcgagagagagcgcgaACGGGAGCGAGACCGCGAGCGCGAGGGCAGACGAGGAGAGGATGCCATCATCGCCTCCGCGGTCGCCGCGCCACCCGGTGCCCTCCTACCGTCGCCGCCGCTCGCGCTGCTGCTCGCGGACACTCGGAGCGGTTGCTATGGAAAACGTGAGGCGCGCGGAGGAGAGAGCAGCGCGCACCATCGGCTGCACCACGACGCCGGTGCCCTTTCCGCGCGCTCGGGCTTGAGACCAGGTGGGAAAGGTAAAGGGTCTGCAGGCGCCGAGATGCTCGGTGGCCGGGTggctgggggcggggctggCAGTGGTGGCAGCAGTAGTGGCAGTGGCGGtggcagcagtagcagcagcagcagtggcctCGAGTACAAAACCCTGCTGGTCAGCAACCTAGGCTCCCACCTGTCAGATGAGCACATAGAGGATGAGCTCTTCCACAAGTTCAAGAAGTTCGGAGATGTCAGTGTAAAGCTCTCCCACACACCTGAGCTTGGACGGGTAGCCTATGTGAACTTCAGGCAAGTAGAGAGCGCACGGGAAGCACGCCACGCCAGGACCCGCCTGGTGCTGGGGGACCGGGCACTTCGGGTCGAGCCTGTGTACGTCCGCCGCCGCAGCTGCACGCCTCCTGATGTGGCCTACGCTCCCTTGCTACACCCTGCCTACCTCTATAGGCAGCGCTCGCTCTCGCCAGGGCCAGGTGGCAGTGCCATCCGCGATACCCGGGCCAGGCACTATGCTGAGGGTGTCGTTGGGCTCGCCAGGGAGAGGGAGCGCCTCCTGGACTACTACAGCGCTTTGGAGGAGAGGAGCCGGGCACTGGCGTTGCAGCTGCAGGTGGAGGAGGACCTGAAACCAGAGGACGATCAGAGAGCGACTCGGAACTTGTTCATCGGCAACCTGGATCACAACGTGTCTGAAGCAGAGCTCAGGCAGGGCTTTGAGAAGTACGGCGTCATCGAGGAGGTGGTGATAAAGCGGCCAGCGCGTGGGCAAGGGTGTGCATATGCTTTTATTAAATTCCAGAACCTGGACATGGCTCACAGGGCCAAGGTAGCCATGCAGGGACGAGTGTTCGGGGGCAACCAGGTGAAAATTGGATACGGCAAGGCCAATCCCACCACACGCCTTTGGGTGGGCGGCTTAGGCCCGAATGTGTCTCTGGCCGCCTTGGCTAGAGAGTTTGATCGCTTTGGGAGCATCCGTACCATTGACTATGTAAAGGGGGACAATTTTGCCTACATCCACTATGAAAGCCTGGATGCAGCCCAAGCAGCATGTGCCCAGATGCGTGGATTCCCACTGGGTGGCCCAAACCGCAGGCTACGAGTGGACTTTGCCAAAGCTGAGGAAGTACGAGCATACCCGCAGCAGTACCAGCTGCCTCTTCCTTTGCCGCCACCTTTTGAGCCACTTAGCGAAGGTTACAGCCGCCACCGCAGCTTGGAGAGAGAACTTAGGGCTCGTGCTCGTTCACCCTCCCACCCACTTTTCGCAGAGAGGGAACGAGAGCGTGAACGTGAATGGAGTCCTCCTAAAAGCGTGGAACGCAGAACTAACACAGAAGCTTTTGGGCGGGGACGAGCCCGCAGTCGCAGCAGGGAGCGATGGACCAAGGACAGAGACTCTGATCGCAAAGGTTTGGACGAACGACGTAAGCGTCGGAGCCGAAGTCGCAGCATCAGTCCAAGTGACAGGCTGTATGAGGACAGGGGGCGCACCAGGGTGAGAGCAGGTGCCCCTGCAACCCCAGACGACAGTCCAGACCGGGCACGTGGCCGCCTTCCTGACTCCACCTCAGAGCCCCAAAGCCACACACCTGACAGCAGCCGCCAGTCCGGAGACGAGCGAGCTCAGTTGCTGTTGCAGGAGGATTCAAACAAGCATCGTaaaggaggagaacatgagcGGAACCACCGCAAAAGTGATGCAGACTTAGATCAGCaggtgaaaaagttcaagagcGAGCCCAAAAAGCCCAGCACGCTCTCAGAATACGCCCAGACCATCAGCAGAGTGTGGCACGGCTCCCTGGTGCTGAAAAACAGCAGCTTCCCCACCAACATGCACATCCTGGAAGGAGGGGCCAGCTTCTTCCTTTCCCTCATGAAAGACAACCAAGCGGGCAGTGCCAAGATCACACAGCTCAAGATAGCCCAGCGACTCCGACTGGACCAGCCCAAGCTGGATGAGGTGACCCGCCGCATCAAGCTGGGCAGCCCCGACGGCTACACCGTCCTCCTGGCCGTCCAGGGCCCCATGGACCAGGACTCGCCTCCTCTGGAACCTGGAATCCAGAAACGCCTTCTGCGCAACCTGGTCACCTACCTCAGAAACAAGCAGGCAGCTGGCGTGATCAGTCTGCCAATCGGAGGACCCAAGGAACGTGAAACGGGGGGCATGCTGTACGCCTTCCCCCCCTGTGAGTTCTCCCAACAGTACCTTCAGACTGCTCTTAAAACTTTGGGCAAAATAGAGGAGGATCACTTGGTCATTGTGGTCGTTAAAGATTCACTTTAATAGTCCTTTTATAGTGCAGTGccgtttaaaacacacacacacacaggtccaAACTAAAAAGAATACCACTGTCTTCTCAAAAATCTGTAAATTTCAGTGTTTCCCAGTTCTGGTCCTGCTGGTATTTGAtctgatttttctatatttGACAAACTTTCCTGACTTTCGATAAACTACGTAATAGTGTaattcataaatattttttttttccaaagctttaTCTATTTTGAATGTGTAAGCTGCTGCGATTCgctgtttaaacaaaaaatatatacatttcaaaattattaaaatctaatctatttgAATTTATTCTAGAATCAGAAATACCAATTCAGACTAAATGTGAGACATCTGGTGGATATAATAGAGTTTATAGATCTGAATttgtataaaattaattttaaaattgtaatagTTTCCAACCGCAAAATTCACTCTAAAATTcagagcaacaaaaaaaaatgtgcattaaaaacaacatttaatagaaatagaattttgccataaaaaaaatgcaagtttATCAAAAGTTAAGCAAATTTCATTCAAATATAGAAAATGCACATTCAAATATATTATTCCAGCCTCGGAGCTTAACCTCAGAGTGTTAAAACAGGAAACCCACTAAAATGTACCAAGACTGGGAAACACTGGCAGAGTTCAACAGTAATTCAGAGAGTTTTAGGGTGAGATGCtgctttttctctttcatttcttcAATTGGTGGTGGAATACATCATGACTAGgcctcacaatatatatatatatataatat
>XM_022682210.1
CGCTCCCATTgtccaagatggcggcgcgggTGCAGCTTCTGTGATGCTGGTGTTTTCGGTGCGTTTGTTTGATGTTTTCCCGCTGAAGCTCCGTCCCCGTATCTCTCTCCGCGTCCGGCGGAACGCGCGTGACGCCCATCGCTCGCGCGGCGTGAGCGCGCGGTGCGGACCGGAGCTGTTTGGTGTCGCCCCGGTTTTTTTTCCTCCGCCGCCAAAAGTTTGCAGGGAGGAGGATGAAGCGGCAGGCCGAGCGGGACACGAGCCCGGCGCGAGCTGCCGCCAAACGGATCCgggagcgcgagagagagcgcgaACGGGAGCGAGACCGCGAGCGCGAGGGCAGACGAGGAGAGGATGCCATCATCGCCTCCGCGGTCGCCGCGCCACCCGGTGCCCTCCTACCGTCGCCGCCGCTCGCGCTGCTGCTCGCGGACACTCGGAGCGGTTGCTATGGAAAACGTGAGGCGCGCGGAGGAGAGAGCAGCGCGCACCATCGGCTGCACCACGACGCCGGTGCCCTTTCCGCGCGCTCGGGCTTGAGACCAGGTGGGAAAGGTAAAGGGTCTGCAGGCGCCGAGATGCTCGGTGGCCGGGTggctgggggcggggctggCAGTGGTGGCAGCAGTAGTGGCAGTGGCGGtggcagcagtagcagcagcagcagtggcctCGAGTACAAAACCCTGCTGGTCAGCAACCTAGGCTCCCACCTGTCAGATGAGCACATAGAGGATGAGCTCTTCCACAAGTTCAAGAAGTTCGGAGATGTCAGTGTAAAGCTCTCCCACACACCTGAGCTTGGACGGGTAGCCTATGTGAACTTCAGGCAAGTAGAGAGCGCACGGGAAGCACGCCACGCCAGGACCCGCCTGGTGCTGGGGGACCGGGCACTTCGGGTCGAGCCTGTGTACGTCCGCCGCCGCAGCTGCACGCCTCCTGATGTGGCCTACGCTCCCTTGCTACACCCTGCCTACCTCTATAGGCAGCGCTCGCTCTCGCCAGGGCCAGGTGGCAGTGCCATCCGCGATACCCGGGCCAGGCACTATGCTGAGGGTGTCGTTGGGCTCGCCAGGGAGAGGGAGCGCCTCCTGGACTACTACAGCGCTTTGGAGGAGAGGAGCCGGGCACTGGCGTTGCAGCTGCAGGTGGAGGAGGACCTGAAACCAGAGGACGATCAGAGAGCGACTCGGAACTTGTTCATCGGCAACCTGGATCACAACGTGTCTGAAGCAGAGCTCAGGCAGGGCTTTGAGAAGTACGGCGTCATCGAGGAGGTGGTGATAAAGCGGCCAGCGCGTGGGCAAGGGTGTGCATATGCTTTTATTAAATTCCAGAACCTGGACATGGCTCACAGGGCCAAGGTAGCCATGCAGGGACGAGTGTTCGGGGGCAACCAGGTGAAAATTGGATACGGCAAGGCCAATCCCACCACACGCCTTTGGGTGGGCGGCTTAGGCCCGAATGTGTCTCTGGCCGCCTTGGCTAGAGAGTTTGATCGCTTTGGGAGCATCCGTACCATTGACTATGTAAAGGGGGACAATTTTGCCTACATCCACTATGAAAGCCTGGATGCAGCCCAAGCAGCATGTGCCCAGATGCGTGGATTCCCACTGGGTGGCCCAAACCGCAGGCTACGAGTGGACTTTGCCAAAGCTGAGGAAGTACGAGCATACCCGCAGCAGTACCAGCTGCCTCTTCCTTTGCCGCCACCTTTTGAGCCACTTAGCGAAGGTTACAGCCGCCACCGCAGCTTGGAGAGAGAACTTAGGGCTCGTGCTCGTTCACCCTCCCACCCACTTTTCGCAGAGAGGGAACGAGAGCGTGAACGTGAATGGAGTCCTCCTAAAAGCGTGGAACGCAGAACTAACACAGAAGCTTTTGGGCGGGGACGAGCCCGCAGTCGCAGCAGGGAGCGATGGACCAAGGACAGAGACTCTGATCGCAAAGGTTTGGACGAACGACGTAAGCGTCGGAGCCGAAGTCGCAGCATCAGTCCAAGTGACAGGCTGTATGAGGACAGGGGGCGCACCAGGGTGAGAGCAGGTGCCCCTGCAACCCCAGACGACAGTCCAGACCGGGCACGTGGCCGCCTTCCTGACTCCACCTCAGAGCCCCAAAGCCACACACCTGACAGCAGCCGCCAGTCCGGAGACGAGCGAGCTCAGTTGCTGTTGCAGGAGGATTCAAACAAGCATCGTaaaggaggagaacatgagcGGAACCACCGCAAAAGTGATGCAGACTTAGATCAGCaggtgaaaaagttcaagagcGAGCCCAAAAAGCCCAGCACGCTCTCAGAATACGCCCAGACCATCAGCAGAGTGTGGCACGGCTCCCTGGTGCTGAAAAACAGCAGCTTCCCCACCAACATGCACATCCTGGAAGGAGGGGCCAGCTTCTTCCTTTCCCTCATGAAAGACAACCAAGCGGGCAGTGCCAAGATCACACAGCTCAAGATAGCCCAGCGACTCCGACTGGACCAGCCCAAGCTGGATGAGGTGACCCGCCGCATCAAGCTGGGCAGCCCCGACGGCTACACCGTCCTCCTGGCCGTCCAGGGCCCCATGGACCAGGACTCGCCTCCTCTGGAACCTGGAATCCAGAAACGCCTTCTGCGCAACCTGGTCACCTACCTCAGAAACAAGCAGGCAGCTGGCGTGATCAGTCTGCCAATCGGAGGACCCAAGGAACGTGAAACGGGGGGCATGCTGTACGCCTTCCCCCCCTGAAAACATCTGATATTAGACGTCGGACTGCGAACACTACTTCCAGAAAAGGGAATTTTTGTTTCTCGTTCTTATAGAAATTGAATTATAAGCTGTTTCTTTGACACTCCACTTCTTTGTTGTACTACATGTAGCCTTTTACGTTCTCATtcgttgtattttttttgcttttcagtTTGTATTGGACGAAAATGTCAGTGTATGCCATGCAAAAATGTCAGTAAACATTTCATGGTCTTCTTTCTAA

Function

symbol description
rbm15b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15B (RNA binding motif protein 15B).

NR:

description
PREDICTED: putative RNA-binding protein 15B

GO: NA

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251542.3 True 3609 mRNA 0.54 1 1371719 1375327
XM_022682210.1 False 2979 mRNA 0.59 2 1371719 1378558

Neighbor

gene id symbol gene type direction distance location
manf manf,LOC107691893,LOC107567190,LOC107592842,LOC107677041,LOC107750980 coding upstream 3459 1362651 ~ 1368260 (+)
dock3 dock3 coding upstream 13346 1146452 ~ 1358373 (+)
LOC103033204 LOC108436691,LOC108255172,LOC107571036,LOC107557964,LOC793844 coding upstream 234033 1055651 ~ 1137686 (+)
LOC103033530 LOC108436692 coding upstream 318903 1040122 ~ 1052816 (+)
LOC103043017 NA coding upstream 333542 1028555 ~ 1038177 (+)
dag1 dag1,LOC108415278,LOC107691879,LOC108415277 coding downstream 523080 1901638 ~ 1956628 (+)
nicn1 nicn1 coding downstream 667090 2045648 ~ 2055723 (+)
amigo3 amigo3 coding downstream 1451637 2830195 ~ 2851261 (+)
ccdc66 NA coding downstream 1694568 3073126 ~ 3092141 (+)
atp6ap1l atp6ap1l,LOC108254970 coding downstream 2020782 3399340 ~ 3414065 (+)
G186457 NA non-coding upstream 231114 1123546 ~ 1140605 (+)
G186458 NA non-coding upstream 277126 1087883 ~ 1094593 (+)
G186449 NA non-coding upstream 295319 996762 ~ 1076400 (+)
G186438 NA non-coding upstream 362836 1007823 ~ 1008883 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding upstream 380672 969485 ~ 991047 (+)
G186641 NA non-coding downstream 11367 1389925 ~ 1390483 (+)
G186642 NA non-coding downstream 16855 1395413 ~ 1396643 (+)
G186637 pcbp4,LOC108436686 non-coding downstream 30565 1409123 ~ 1412311 (+)
G186685 NA non-coding downstream 176614 1555172 ~ 1555452 (+)
G186686 NA non-coding downstream 250300 1628858 ~ 1629351 (+)
podxl2 NA other upstream 276382 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 833503 510575 ~ 538216 (+)
G186231 NA other upstream 1256632 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1601939 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2013829 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4401333 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 5698607 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 5813596 7192154 ~ 7192226 (+)

Expression


Co-expression Network