RNA id: XM_007251542.3


Basic Information

Item Value
RNA id XM_007251542.3
length 3609
RNA type mRNA
GC content 0.54
exon number 1
gene id rbm15b
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 1371719 ~ 1378558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCCCATTgtccaagatggcggcgcgggTGCAGCTTCTGTGATGCTGGTGTTTTCGGTGCGTTTGTTTGATGTTTTCCCGCTGAAGCTCCGTCCCCGTATCTCTCTCCGCGTCCGGCGGAACGCGCGTGACGCCCATCGCTCGCGCGGCGTGAGCGCGCGGTGCGGACCGGAGCTGTTTGGTGTCGCCCCGGTTTTTTTTCCTCCGCCGCCAAAAGTTTGCAGGGAGGAGGATGAAGCGGCAGGCCGAGCGGGACACGAGCCCGGCGCGAGCTGCCGCCAAACGGATCCgggagcgcgagagagagcgcgaACGGGAGCGAGACCGCGAGCGCGAGGGCAGACGAGGAGAGGATGCCATCATCGCCTCCGCGGTCGCCGCGCCACCCGGTGCCCTCCTACCGTCGCCGCCGCTCGCGCTGCTGCTCGCGGACACTCGGAGCGGTTGCTATGGAAAACGTGAGGCGCGCGGAGGAGAGAGCAGCGCGCACCATCGGCTGCACCACGACGCCGGTGCCCTTTCCGCGCGCTCGGGCTTGAGACCAGGTGGGAAAGGTAAAGGGTCTGCAGGCGCCGAGATGCTCGGTGGCCGGGTggctgggggcggggctggCAGTGGTGGCAGCAGTAGTGGCAGTGGCGGtggcagcagtagcagcagcagcagtggcctCGAGTACAAAACCCTGCTGGTCAGCAACCTAGGCTCCCACCTGTCAGATGAGCACATAGAGGATGAGCTCTTCCACAAGTTCAAGAAGTTCGGAGATGTCAGTGTAAAGCTCTCCCACACACCTGAGCTTGGACGGGTAGCCTATGTGAACTTCAGGCAAGTAGAGAGCGCACGGGAAGCACGCCACGCCAGGACCCGCCTGGTGCTGGGGGACCGGGCACTTCGGGTCGAGCCTGTGTACGTCCGCCGCCGCAGCTGCACGCCTCCTGATGTGGCCTACGCTCCCTTGCTACACCCTGCCTACCTCTATAGGCAGCGCTCGCTCTCGCCAGGGCCAGGTGGCAGTGCCATCCGCGATACCCGGGCCAGGCACTATGCTGAGGGTGTCGTTGGGCTCGCCAGGGAGAGGGAGCGCCTCCTGGACTACTACAGCGCTTTGGAGGAGAGGAGCCGGGCACTGGCGTTGCAGCTGCAGGTGGAGGAGGACCTGAAACCAGAGGACGATCAGAGAGCGACTCGGAACTTGTTCATCGGCAACCTGGATCACAACGTGTCTGAAGCAGAGCTCAGGCAGGGCTTTGAGAAGTACGGCGTCATCGAGGAGGTGGTGATAAAGCGGCCAGCGCGTGGGCAAGGGTGTGCATATGCTTTTATTAAATTCCAGAACCTGGACATGGCTCACAGGGCCAAGGTAGCCATGCAGGGACGAGTGTTCGGGGGCAACCAGGTGAAAATTGGATACGGCAAGGCCAATCCCACCACACGCCTTTGGGTGGGCGGCTTAGGCCCGAATGTGTCTCTGGCCGCCTTGGCTAGAGAGTTTGATCGCTTTGGGAGCATCCGTACCATTGACTATGTAAAGGGGGACAATTTTGCCTACATCCACTATGAAAGCCTGGATGCAGCCCAAGCAGCATGTGCCCAGATGCGTGGATTCCCACTGGGTGGCCCAAACCGCAGGCTACGAGTGGACTTTGCCAAAGCTGAGGAAGTACGAGCATACCCGCAGCAGTACCAGCTGCCTCTTCCTTTGCCGCCACCTTTTGAGCCACTTAGCGAAGGTTACAGCCGCCACCGCAGCTTGGAGAGAGAACTTAGGGCTCGTGCTCGTTCACCCTCCCACCCACTTTTCGCAGAGAGGGAACGAGAGCGTGAACGTGAATGGAGTCCTCCTAAAAGCGTGGAACGCAGAACTAACACAGAAGCTTTTGGGCGGGGACGAGCCCGCAGTCGCAGCAGGGAGCGATGGACCAAGGACAGAGACTCTGATCGCAAAGGTTTGGACGAACGACGTAAGCGTCGGAGCCGAAGTCGCAGCATCAGTCCAAGTGACAGGCTGTATGAGGACAGGGGGCGCACCAGGGTGAGAGCAGGTGCCCCTGCAACCCCAGACGACAGTCCAGACCGGGCACGTGGCCGCCTTCCTGACTCCACCTCAGAGCCCCAAAGCCACACACCTGACAGCAGCCGCCAGTCCGGAGACGAGCGAGCTCAGTTGCTGTTGCAGGAGGATTCAAACAAGCATCGTaaaggaggagaacatgagcGGAACCACCGCAAAAGTGATGCAGACTTAGATCAGCaggtgaaaaagttcaagagcGAGCCCAAAAAGCCCAGCACGCTCTCAGAATACGCCCAGACCATCAGCAGAGTGTGGCACGGCTCCCTGGTGCTGAAAAACAGCAGCTTCCCCACCAACATGCACATCCTGGAAGGAGGGGCCAGCTTCTTCCTTTCCCTCATGAAAGACAACCAAGCGGGCAGTGCCAAGATCACACAGCTCAAGATAGCCCAGCGACTCCGACTGGACCAGCCCAAGCTGGATGAGGTGACCCGCCGCATCAAGCTGGGCAGCCCCGACGGCTACACCGTCCTCCTGGCCGTCCAGGGCCCCATGGACCAGGACTCGCCTCCTCTGGAACCTGGAATCCAGAAACGCCTTCTGCGCAACCTGGTCACCTACCTCAGAAACAAGCAGGCAGCTGGCGTGATCAGTCTGCCAATCGGAGGACCCAAGGAACGTGAAACGGGGGGCATGCTGTACGCCTTCCCCCCCTGTGAGTTCTCCCAACAGTACCTTCAGACTGCTCTTAAAACTTTGGGCAAAATAGAGGAGGATCACTTGGTCATTGTGGTCGTTAAAGATTCACTTTAATAGTCCTTTTATAGTGCAGTGccgtttaaaacacacacacacacaggtccaAACTAAAAAGAATACCACTGTCTTCTCAAAAATCTGTAAATTTCAGTGTTTCCCAGTTCTGGTCCTGCTGGTATTTGAtctgatttttctatatttGACAAACTTTCCTGACTTTCGATAAACTACGTAATAGTGTaattcataaatattttttttttccaaagctttaTCTATTTTGAATGTGTAAGCTGCTGCGATTCgctgtttaaacaaaaaatatatacatttcaaaattattaaaatctaatctatttgAATTTATTCTAGAATCAGAAATACCAATTCAGACTAAATGTGAGACATCTGGTGGATATAATAGAGTTTATAGATCTGAATttgtataaaattaattttaaaattgtaatagTTTCCAACCGCAAAATTCACTCTAAAATTcagagcaacaaaaaaaaatgtgcattaaaaacaacatttaatagaaatagaattttgccataaaaaaaatgcaagtttATCAAAAGTTAAGCAAATTTCATTCAAATATAGAAAATGCACATTCAAATATATTATTCCAGCCTCGGAGCTTAACCTCAGAGTGTTAAAACAGGAAACCCACTAAAATGTACCAAGACTGGGAAACACTGGCAGAGTTCAACAGTAATTCAGAGAGTTTTAGGGTGAGATGCtgctttttctctttcatttcttcAATTGGTGGTGGAATACATCATGACTAGgcctcacaatatatatatatatataatat

Function

GO: NA

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252823 lncRNA upstream 231114 1123546 ~ 1140605 (+) True G186457
TU252824 lncRNA upstream 277126 1087883 ~ 1094593 (+) True G186458
TU252825 lncRNA upstream 277126 1087883 ~ 1094593 (+) False G186458
TU252811 lncRNA upstream 295319 996762 ~ 1076400 (+) True G186449
TU253097 lncRNA downstream 14598 1389925 ~ 1390483 (+) True G186641
TU253098 lncRNA downstream 20086 1395413 ~ 1396643 (+) True G186642
TU253091 lncRNA downstream 33796 1409123 ~ 1412311 (+) True G186637
TU253155 lncRNA downstream 179845 1555172 ~ 1555452 (+) True G186685
TU253156 lncRNA downstream 253531 1628858 ~ 1629351 (+) True G186686
XM_022682209.1 mRNA upstream 3459 1362651 ~ 1368260 (+) True manf
XM_022682205.1 mRNA upstream 13346 1146453 ~ 1358373 (+) False dock3
XM_022682216.1 mRNA downstream 526311 1901638 ~ 1956628 (+) True dag1
XM_007251488.3 mRNA downstream 670321 2045648 ~ 2055723 (+) True nicn1
XM_022682220.1 mRNA downstream 1454868 2830195 ~ 2851261 (+) False amigo3
XM_015606385.2 mRNA downstream 1454868 2830195 ~ 2834209 (+) True amigo3
XM_022682221.1 mRNA downstream 1697799 3073126 ~ 3092141 (+) True ccdc66
XR_002651586.1 other upstream 833503 510575 ~ 538216 (+) True cers5
TU252478 other upstream 1256632 107396 ~ 115087 (+) True G186231
TU253378 other downstream 1605170 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2017060 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 2548125 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 3414649 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 4771358 6146685 ~ 6147519 (+) True LOC111195362

Expression Profile