RNA id: TU252825


Basic Information

Item Value
RNA id TU252825
length 637
lncRNA type intronic
GC content 0.37
exon number 2
gene id G186458
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 1087883 ~ 1094593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTCGTGGAAATCGACAAAGACAGTCAACGAGCCGGGATGCCAAAAAgagaaggtttttattttgaagttgcaaaaagcaaaaataaagcgAAAGCAATGGATGAAGAATGAGAGTAGTCAGGAAAGTCGGAAAAAGCCCCTTTCTGTGTCGACTGGGCATTTTTATACAGTCCTCGTTCATACATGAGGTAATGTCCACGTGATCTGTTTGGAACAGGTCCCTACCAGATATAAAAAGAGGAACAGAAAACTGCACGTACAACAGAAGATAAgcttttttaggagagaataatTCACAAATCAGAAAACTCTTTTTTACTCTGACAAGACAGTTTCCAGGCAAACCTGATTTTCATTCCTTGAGGagagaataattcataaatcagaaAACACCATTTGCTATGACCCGCTAGTCTCCAGGCAGAACTCAATTTTCATCTCTTTAGGCCTCAAATCTGAGCCTGTATGTCCCAGGAGCAGAGAATACACAGTTCACATAAAATCAATGATAACATActgattgaatgattaacaggatgaatattgaatgattaacagtaATAATCAGTATAATTGATTATGAATACATGAAGTAAATCAGGAATACATggaataaatgttgattttccCCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252811 lncRNA upstream 11483 996762 ~ 1076400 (+) True G186449
TU252790 lncRNA upstream 79000 1007823 ~ 1008883 (+) True G186438
TU252806 lncRNA upstream 96836 981434 ~ 991047 (+) True G186447
TU252808 lncRNA upstream 106052 969485 ~ 981831 (+) False G186447
TU252799 lncRNA upstream 111733 939375 ~ 976150 (+) True G186440
TU252823 lncRNA downstream 28953 1123546 ~ 1140605 (+) True G186457
TU253097 lncRNA downstream 295332 1389925 ~ 1390483 (+) True G186641
TU253098 lncRNA downstream 300820 1395413 ~ 1396643 (+) True G186642
TU253091 lncRNA downstream 314530 1409123 ~ 1412311 (+) True G186637
TU253155 lncRNA downstream 460579 1555172 ~ 1555452 (+) True G186685
XM_022682198.1 mRNA upstream 35067 1040122 ~ 1052816 (+) True LOC103033530
XM_022682197.1 mRNA upstream 49706 1028555 ~ 1038177 (+) True LOC103043017
XM_022682196.1 mRNA upstream 61820 1013404 ~ 1026063 (+) True LOC103042257
XM_022682195.1 mRNA upstream 61820 1016033 ~ 1026063 (+) False LOC103042257
XM_022682194.1 mRNA upstream 82280 991934 ~ 1005603 (+) True LOC103033844
XM_022682201.1 mRNA downstream 51859 1146452 ~ 1358373 (+) True dock3
XM_022682202.1 mRNA downstream 51859 1146452 ~ 1358373 (+) False dock3
XM_022682203.1 mRNA downstream 51859 1146452 ~ 1358373 (+) False dock3
XM_022682204.1 mRNA downstream 51859 1146452 ~ 1358373 (+) False dock3
XM_022682205.1 mRNA downstream 51860 1146453 ~ 1358373 (+) False dock3
XR_002651586.1 other upstream 549667 510575 ~ 538216 (+) True cers5
TU252478 other upstream 972796 107396 ~ 115087 (+) True G186231
TU253378 other downstream 1885904 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2297794 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 2828859 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 3695383 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 5052092 6146685 ~ 6147519 (+) True LOC111195362