RNA id: TU252806


Basic Information

Item Value
RNA id TU252806
length 1427
lncRNA type inter_gene
GC content 0.48
exon number 9
gene id G186447
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 969485 ~ 991047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAActtattaatacttttattgAAAGTTATCTTTTGTGAGGAAATTTTAttggaaaaataagaaaaaatgaatTGTAAAATTAAGAGAGTTTAGGACTGGTCTCGCCACATGGATTCATGTCTGAATGAACGATAGAACAATGTTCTGGAAAAGTCTTTTAGGCTCTCGGGCCTCATCCATCCTGTCCGTGGAGGCGTGGCCTGTTCTCCACCAGACGCTCTCCGCAGGTCTCCGCCTCACTGCTCGTTCTGCTGGGTGTCTGTGATGGAGGACAAGCCCCCCTGGCTCTTATTGACGTCACTGATGCAGGACCACTGTCCGTCCACCGACTCCTTCCACAGCGTCACCTGTTGTCTCCTCCAGATACTGCCAGGATGTTCCCGGTGATGGACCAGCTCACGTGCCAGACCACGTCGTTGAATTTGTGCAGGAGTTTAGCGGTCCAGGTGTTTCCGGAGGGATCGTCACACGTCCAGATAAACACCCTACCGtcCTGTGAGCAGCTGGCGATTGTGCTGGTGGTCAGTCCAATAGATGGAGCCCACCCTACATCTCTCACCCAATCACTGTGAGCTTCAAGTTTCTGGTCCTCCTTCCATTGGCCGTCCTCTTCTTTCCACAGCTTGACTAAGTTGTCGCAGCCCCCGGAGACGAATCTCTTGATGTAGAGGGGTTTCTGTCCTGTGGGCTGGTCTATAAGACTTCCTGGAACCACGGCTGGAGCCCAGCTCACTGCATTACAGCCAAGTGTGTGCATTATTAATCTTCTTAATGTCCCACTGTCCGTCACCGGTGTAGGTCAGAATTGAAATCGCGCCATCAGAGCTTCCACAAGCCAGAATCAAACCAAACTCATACGGCCCCCAGCAGATAGAGTTCACTGAGGAGTTGTGGCCTGTGTATTTGTACATCTTATCCCATGTCCCGTTCTCCTCTTTCCAGATAATGACTTTTCGGTCATAGGAACAGGAGGCCAGGATGTTGCCGTAGGTTGGATGAGCCCAGGCTACCTGCCACACTGGACCTTCATGCCCCCTCAAATCAGCCACAAGAATCTGTCCTCCATTCTTTACATCAAAGATCTTCACAGAGCGATCAGAGGAGCAGGTCGCCAGTCGTGTGCCATAGTAGTCCATCTGGGCATCAtgGATCATGTCCTCGTGTGAGGTATCCACTGTATTAATTACAGACACCATCTTCCTTTATTAATCCGGATCCAGAGAAACtataaaacagtaactttatcCGGAGAGAAAATCAGCCAAAGGGCAGAACTGATCTCTACGTGGCAAACCGACCGCCGGTTTCATAAAGGTTCCGGGTGGAGACACGGACCCGAATAATAGTTCCGAAGCTTCTGGATTTCAGCacaatttagtttaaaaattgAAATTAACAGAATTAATAAATGATCGGTGCATGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252799 lncRNA upstream 5284 939375 ~ 976150 (+) True G186440
TU252786 lncRNA upstream 76389 899941 ~ 905045 (+) True G186436
TU252759 lncRNA upstream 319206 661569 ~ 662228 (+) True G186416
TU252742 lncRNA upstream 349173 629349 ~ 632261 (+) False podxl2
TU252744 lncRNA upstream 349173 629349 ~ 632261 (+) False podxl2
TU252811 lncRNA downstream 5715 996762 ~ 1076400 (+) True G186449
TU252790 lncRNA downstream 16776 1007823 ~ 1008883 (+) True G186438
TU252824 lncRNA downstream 96836 1087883 ~ 1094593 (+) True G186458
TU252825 lncRNA downstream 96836 1087883 ~ 1094593 (+) False G186458
TU252823 lncRNA downstream 132499 1123546 ~ 1140605 (+) True G186457
XM_022682186.1 mRNA upstream 213977 728545 ~ 767457 (+) True slc6a6
XM_022682187.1 mRNA upstream 213977 733030 ~ 767457 (+) False slc6a6
XM_022682185.1 mRNA upstream 213977 738226 ~ 767457 (+) False slc6a6
XM_007251495.3 mRNA upstream 334179 643785 ~ 647255 (+) False lsm3
XM_022682194.1 mRNA downstream 887 991934 ~ 1005603 (+) True LOC103033844
XM_022682196.1 mRNA downstream 22357 1013404 ~ 1026063 (+) True LOC103042257
XM_022682195.1 mRNA downstream 24986 1016033 ~ 1026063 (+) False LOC103042257
XM_022682197.1 mRNA downstream 37508 1028555 ~ 1038177 (+) True LOC103043017
XM_022682198.1 mRNA downstream 49075 1040122 ~ 1052816 (+) True LOC103033530
XR_002651586.1 other upstream 443218 510575 ~ 538216 (+) True cers5
TU252478 other upstream 866347 107396 ~ 115087 (+) True G186231
TU253378 other downstream 1989450 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2401340 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 2932405 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 3798929 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 5155638 6146685 ~ 6147519 (+) True LOC111195362

Expression Profile