ift52 (ift52)


Basic Information

Item Value
gene id ift52
gene name ift52
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7362563 ~ 7375037 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251379.2
ATGGGCGACGCGTCCGTGGTTACTGTTGTCTTCAGCACTTACCCATAATGCACCGCGGCAGCTAAGGGTGAAAAACGATGCTGAATGTTGAGATTTTTGTCTTTAGATAACATAGGCAGCTCTTAAAGGCACGATGGATAAAGAACCACGGACCACCGTAATTTTCAACTCCTCCAAACGTGAGCTGTTTACTGCCAACAGTGGATACAAGTCTCTTCAGAAGAGGCTAAGGGCACAGTGGAAGATTCAAAGCATCAAAGAAGAGCTCACGACAGAGAAACTACATGGTGTGAAGCTGTGGATTACTGCAGGTCCCAGAGAGAAGTTCACGGCTGCTGAGTTGGAGGTCCTGAAGCAGTACCTAAACAGTGGAGGAAATATTCTTGCTATGCttggagaaggaggagaagtcAAATATGACACCAATATCAATTTTCTCCTGGAAGAGTTTGGAATAATGGTCAACAGTGACACTGTAGTGCGAAATGTGTACTACAAGTATTTCCATCCCAAAGAAGCACTTGTTTCCAATGGTGTTCTTAACAGGGAGATCAGTCGTGCAGCTGGGAAAGTCTTAACAGGGATCATTGATGATGAAAGCCCTGGAAACAATGCACAGGCCCTCACATTTGTGTATCCATATGGAGCGACACTGAATGTAATGAAACCGGCTGCAGCTGTTCTCTCCACCGGCTCTGTGTGCTTCCCTCTTAATCGGCCAGTTCTGGCCTTATACCAAATACCAAATGCAGGTAAACTGGCAGTGATGGGTTCCTGTCACATGTTTAGTGACCAGTATCTGGACAAGGAGGAGAACAGTAAAATAATGGATGTTCTGTTCCAGTGGCTGATGACTGACAACATTCACCTTAATCAAATAGATGCAGAAGACCCAGAGATCACAGATTACACCATGTTACCAGACACAGGCTGCCTGTCTGAGAGACTGAGGGTGTGTCTGCAGGAGGGGGACGAAAACCCACGGGACTTCACCTCACTTTTTGATATGTCTCTATTTAAACTGTCAACCGACACCCTTCCATCTGTTATCAGGGCCTACAAGCAACTGAATGTCAAACATGAACCACTTCAGTTGATCACACCACAGTTTGAAACGCCACTGCCACCTCTGCAGCCCGCTGTCTTCCAGCCTGCCTTTAGAGACCTGCCCCCACCCATGCTTGACCTTTTTGACCTTGACGAAACCTTCTCATCAGAGAAAGTGCGACTAGCCCAACTGTCAAACAAATGCACTGACGATGACCTCGAGTTTTATGTGCGAAAATGCGGAGACATTCTAGGAATTAATGGAAAACTGGACAAAGAAAAGAGAGACGCCAAACACATCCTAGAGCACATCTTCTTTCAGGTGGTGGAGTTTAAAAAGCTGAACCAGGAACATGATATCGACACAACACAGGCGAGATTTTCTCCGTTCTAAAGCTGGAAAACTTAAGAAAGTGAAGGAATGAAGAGTTGGACTAAAAGATGTTGAATGAAGCCACGAATTGACTCGAACAGCATGTAATCTTCTACTACATCTTGGTGTGAAACCAGTCAGGATCTAGGATTTCTTTTACGCCTTTCTTATAATATCAGAAGACAAGAAGATAGTTGTACATTTAACTCTTAAAGCAACCCCATTTCAGACACTCATATCTACACTCATTGCGAGGAGCATTTGGACCTGAATGTACTGGTTTTGGATGCTgatgtgtacgtgtgtgtgtgtgtgagtgtggcaGAGTTTAGTATACAGAAGACACATTTCCAGTTATTTTATAACTCGTATTTAAACCATATTTAACCGAATGTTCTGCACATGTTCAGCACTAAAGTTCACAGAGAATTAAAGTCTAAAAACTACACTATATGGTAAATACTGATATattcaaaaaaaagtttgtaagatattaaaatatatgtaaaaatatatatgtaagatATTAAAAATGAGCATATTGTAATATCAAGCCTGCTATAAAGCAGTACTTTTAGAAATTACATTGAGAGATGAGTCTTGAATTTTTCCTATGTTTCTATATAGGAACATCATAATTAAAGGAGAACAAACATTATTTTGCAAAGTCAGTAAAATACCTTAAACAATGCATCTGTACGTTTTATTATTGaacaatatatatacttattgaACAATGAGGCATTTTTACACCAATCTAAAATGCTTAAATAAGCAACCCTGTCCTATAGGGTTTTAGGACAGTCTTTAAGCAAATCAAACATTACTTTCTCTTTTCATTCTCAATAAAAAACTGCTAGATTAGTATGGTTTAGTGTGTTACCTGCTCAAACACATCCATTAAACCTGTCAAATAACCAATAATGAGTTTTGTTAGATTAGCTCTGTTAGATTAAGGTTCCCTACAGGTCCGTACTGTACATTCTCTGTGAACCCAAggctgaataaaaaaagtgtattcaTGTGTACAATATCACCATGCCTTGATGTTTATAAAATGCAgttttcaataaacacattttttaactgTT
>XM_022682331.1
GCGGCAGCTAAGGGTGAAAAACGATGCTGAATGTTGAGATAACATAGGCAGCTCTTAAAGGCACGATGGATAAAGAACCACGGACCACCGTAATTTTCAACTCCTCCAAACGTGAGCTGTTTACTGCCAACAGTGGATACAAGTCTCTTCAGAAGAGGCTAAGGGCACAGTGGAAGATTCAAAGCATCAAAGAAGAGCTCACGACAGAGAAACTACATGGTGTGAAGCTGTGGATTACTGCAGGTCCCAGAGAGAAGTTCACGGCTGCTGAGTTGGAGGTCCTGAAGCAGTACCTAAACAGTGGAGGAAATATTCTTGCTATGCttggagaaggaggagaagtcAAATATGACACCAATATCAATTTTCTCCTGGAAGAGTTTGGAATAATGGTCAACAGTGACACTGTAGTGCGAAATGTGTACTACAAGTATTTCCATCCCAAAGAAGCACTTGTTTCCAATGGTGTTCTTAACAGGGAGATCAGTCGTGCAGCTGGGAAAGTCTTAACAGGGATCATTGATGATGAAAGCCCTGGAAACAATGCACAGGCCCTCACATTTGTGTATCCATATGGAGCGACACTGAATGTAATGAAACCGGCTGCAGCTGTTCTCTCCACCGGCTCTGTGTGCTTCCCTCTTAATCGGCCAGTTCTGGCCTTATACCAAATACCAAATGCAGGTAAACTGGCAGTGATGGGTTCCTGTCACATGTTTAGTGACCAGTATCTGGACAAGGAGGAGAACAGTAAAATAATGGATGTTCTGTTCCAGTGGCTGATGACTGACAACATTCACCTTAATCAAATAGATGCAGAAGACCCAGAGATCACAGATTACACCATGTTACCAGACACAGGCTGCCTGTCTGAGAGACTGAGGGTGTGTCTGCAGGAGGGGGACGAAAACCCACGGGACTTCACCTCACTTTTTGATATGTCTCTATTTAAACTGTCAACCGACACCCTTCCATCTGTTATCAGGGCCTACAAGCAACTGAATGTCAAACATGAACCACTTCAGTTGATCACACCACAGTTTGAAACGCCACTGCCACCTCTGCAGCCCGCTGTCTTCCAGCCTGCCTTTAGAGACCTGCCCCCACCCATGCTTGACCTTTTTGACCTTGACGAAACCTTCTCATCAGAGAAAGTGCGACTAGCCCAACTGTCAAACAAATGCACTGACGATGACCTCGAGTTTTATGTGCGAAAATGCGGAGACATTCTAGGAATTAATGGAAAACTGGACAAAGAAAAGAGAGACGCCAAACACATCCTAGAGCACATCTTCTTTCAGGTGGTGGAGTTTAAAAAGCTGAACCAGGAACATGATATCGACACAACACAGGCGAGATTTTCTCCGTTCTAAAGCTGGAAAACTTAAGAAAGTGAAGGAATGAAGAGTTGGACTAAAAGATGTTGAATGAAGCCACGAATTGACTCGAACAGCATGTAATCTTCTACTACATCTTGGTGTGAAACCAGTCAGGATCTAGGATTTCTTTTACGCCTTTCTTATAATATCAGAAGACAAGAAGATAGTTGTACATTTAACTCTTAAAGCAACCCCATTTCAGACACTCATATCTACACTCATTGCGAGGAGCATTTGGACCTGAATGTACTGGTTTTGGATGCTgatgtgtacgtgtgtgtgtgtgtgagtgtggcaGAGTTTAGTATACAGAAGACACATTTCCAGTTATTTTATAACTCGTATTTAAACCATATTTAACCGAATGTTCTGCACATGTTCAGCACTAAAGTTCACAGAGAATTAAAGTCTAAAAACTACACTATATGGTAAATACTGATATattcaaaaaaaagtttgtaagatattaaaatatatgtaaaaatatatatgtaagatATTAAAAATGAGCATATTGTAATATCAAGCCTGCTATAAAGCAGTACTTTTAGAAATTACATTGAGAGATGAGTCTTGAATTTTTCCTATGTTTCTATATAGGAACATCATAATTAAAGGAGAACAAACATTATTTTGCAAAGTCAGTAAAATACCTTAAACAATGCATCTGTACGTTTTATTATTGaacaatatatatacttattgaACAATGAGGCATTTTTACACCAATCTAAAATGCTTAAATAAGCAACCCTGTCCTATAGGGTTTTAGGACAGTCTTTAAGCAAATCAAACATTACTTTCTCTTTTCATTCTCAATAAAAAACTGCTAGATTAGTATGGTTTAGTGTGTTACCTGCTCAAACACATCCATTAAACCTGTCAAATAACCAATAATGAGTTTTGTTAGATTAGCTCTGTTAGATTAAGGTTCCCTACAGGTCCGTACTGTACATTCTCTGTGAACCCAAggctgaataaaaaaagtgtattcaTGTGTACAATATCACCATGCCTTGATGTTTATAAAATGCAgttttcaataaacacattttttaactgTT

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

NR:

description
intraflagellar transport protein 52 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K19681 IFT52; intraflagellar transport protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251379.2 True 2511 mRNA 0.40 14 7362563 7375037
XM_022682331.1 False 2443 mRNA 0.40 14 7362617 7375037

Neighbor

gene id symbol gene type direction distance location
LOC103037081 srsf6,LOC107654800 coding upstream 2029 7354235 ~ 7360534 (+)
acot8 acot8,LOC107730625,LOC107670930,LOC107722006 coding upstream 9277 7346943 ~ 7353286 (+)
LOC103037733 LOC108438636 coding upstream 152363 7207318 ~ 7210200 (+)
LOC103038368 NA coding upstream 223525 7128165 ~ 7139038 (+)
LOC103039610 NA coding upstream 360551 6990940 ~ 7002012 (+)
mybl2 mybl2 coding downstream 4720 7379757 ~ 7393057 (+)
rpn2 rpn2 coding downstream 20888 7395925 ~ 7409747 (+)
cdk5rap1 cdk5rap1,LOC102203826,LOC102305298,LOC102194700 coding downstream 48904 7423941 ~ 7434242 (+)
LOC103021633 LOC108438615 coding downstream 140710 7515747 ~ 7740830 (+)
LOC103023694 LOC103023694,LOC108438614,LOC108280988 coding downstream 453473 7828510 ~ 8010560 (+)
G187900 NA non-coding upstream 37212 7324685 ~ 7325351 (+)
G187850 NA non-coding upstream 169204 7190057 ~ 7193359 (+)
G187848 NA non-coding upstream 172637 7189032 ~ 7189926 (+)
G187845 NA non-coding upstream 191913 7170414 ~ 7170650 (+)
G187844 NA non-coding upstream 197796 7164494 ~ 7164767 (+)
G187904 NA non-coding downstream 2114 7377151 ~ 7378588 (+)
G188009 NA non-coding downstream 625797 8000834 ~ 8001377 (+)
G188051 NA non-coding downstream 674601 8049638 ~ 8050112 (+)
G188062 NA non-coding downstream 745293 8120330 ~ 8120628 (+)
G188063 rap1aa,LOC106582744,LOC107751450,LOC101070080 non-coding downstream 746707 8121744 ~ 8139505 (+)
trnaq-uug_4 NA other upstream 170337 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 263891 7077165 ~ 7098672 (+)
p3h1 NA other upstream 1563584 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 3967720 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 4360548 2980497 ~ 3002015 (+)
LOC111195452 NA other downstream 736966 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 881759 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 1908758 9283795 ~ 9819955 (+)
G188325 NA other downstream 2479270 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 2726718 10101755 ~ 10106530 (+)

Expression


Co-expression Network