RNA id: TU255408


Basic Information

Item Value
RNA id TU255408
length 645
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G188356
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9953600 ~ 9956589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAAAACGGTCAATCAGGTCGCGTAAGCGCAGTTGTTGGTGCTCTGATAAGCCCACACAACTGCGCTCCAGCATCTCTTCTATCGGATCGATAATTAACCCCGCATCTAACGGACCCTCGAACATAACGTGCACCGAATCACACGCATCCCCCCCCAACGGCTCACTTACCCCGCACTCGTCATGTTCCTCTACGGGGAGTCCAGTCACCAGAACCGAGCCCCGTGCACAATCAATGACGGCTCCAACGCGTGCGAGCAGgtccttgcccagaatgcacggaTCATTGATGTGCCCAACCCAGAACTCCTGCTGAAAGGGGCCCTTGCCAACATCAATTGTCAGCTCCGTTAATCCCAGGAGAGcgataggatctccggtgacTGAGGAGAGCGCGATGCGCCAGCTGTAGTCCACCACAAACTCGCCTGCCACACCCCTCGCGAGCTCAGGCTTTATCAGCGAGACTGACGAGCCCGTGTCCACCAGCGCGTCCACCGTCACTCCATTCAGCGTGCACTTCAGAAAATAGCCGCCGGGTCCGACAGCTCCGTGATCAGGTTCCGAGGGTAAGCCTAGAATCCCTGGGGCCACCGTAACCCTCACTTGgtggtcccggctccgtttcccGGCCGGCCGCACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255350 lncRNA upstream 123424 9829959 ~ 9830176 (+) True G188316
TU255266 lncRNA upstream 158384 9764949 ~ 9795216 (+) True LOC103032765
XR_002651600.1 lncRNA upstream 198989 9752731 ~ 9754611 (+) True LOC111195368
TU255297 lncRNA upstream 199000 9752930 ~ 9754600 (+) False LOC111195368
TU255251 lncRNA upstream 779940 9173390 ~ 9173660 (+) True G188222
TU255411 lncRNA downstream 7940 9964529 ~ 9966475 (+) False G188358
TU255412 lncRNA downstream 7940 9964529 ~ 9971293 (+) True G188358
TU255422 lncRNA downstream 109149 10065738 ~ 10066423 (+) True G188366
TU255560 lncRNA downstream 134620 10091209 ~ 10157456 (+) True G188478
TU255614 lncRNA downstream 271908 10228497 ~ 10229131 (+) True G188527
XM_007230592.3 mRNA upstream 114278 9836099 ~ 9839322 (+) True klhdc7a
XM_007230591.3 mRNA upstream 133645 9283795 ~ 9819955 (+) False LOC103032765
XM_015607518.2 mRNA upstream 133645 9283795 ~ 9819955 (+) False LOC103032765
XM_022682354.1 mRNA upstream 1220475 8446783 ~ 8733125 (+) False LOC103024232
XM_007243192.3 mRNA downstream 67403 10023992 ~ 10041141 (+) True dhrs3
XM_015604311.2 mRNA downstream 77422 10034011 ~ 10041141 (+) False dhrs3
XM_022682361.1 mRNA downstream 145166 10101755 ~ 10106530 (+) True LOC111195371
XM_007240551.3 mRNA downstream 163444 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA downstream 171606 10128195 ~ 10132709 (+) True LOC103039471
TU255362 other upstream 96605 9854307 ~ 9856995 (+) True G188325
XR_002651599.1 other upstream 1681911 8256798 ~ 8271689 (+) False agtrap
TU255026 other upstream 1840358 8112490 ~ 8113242 (+) False LOC111195452
trnaq-uug_4 other upstream 2761374 7192154 ~ 7192226 (+) True trnaq-uug_4
TU254736 other upstream 2854931 7092765 ~ 7098669 (+) False LOC103029365
TU255566 other downstream 148027 10104616 ~ 10106300 (+) False LOC111195371
XR_002651602.1 other downstream 220541 10177130 ~ 10180602 (+) True LOC111195373
XR_002651603.1 other downstream 257770 10214359 ~ 10214948 (+) True LOC111195374
XR_002651604.1 other downstream 263953 10220542 ~ 10221130 (+) True LOC111195375
TU255727 other downstream 346771 10303360 ~ 10303665 (+) True G188624

Expression Profile