RNA id: XM_022682366.1


Basic Information

Item Value
RNA id XM_022682366.1
length 3884
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC103026179
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10475939 ~ 10963809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacatatacactgacGCACACATAACGCGTTCTCTCACACTGTACCGCGGAGCACCGAGAGAGAGAAGCGCGCGCTCAAGGGGAGCCTTCCGCGTCCATGTCCACTGCCGCTGCCTCGCTCTGTGATGGAGCCGTGATGTGTGCCGCCCGCGCGCCACCCGGATCGCCCCGATGCGCGTGAGCGAGGCCGGCCGCGCGTTCCTGCAGTGCACCACCCTGCACGGCGCGCGCCACATCTTCCTGTCCCCGTCCCCGCCGCGGCGCGCGGCCTGGTTGTTCGCTTTCCTTGCGGCTCTCGCGCTGCTTTTCACATGGTCCTCCAACCGCGTGCGCTACCTGCTCTCTGCGCCTGTCTACACGCGCGCGCACGTGACGCACGCCCGTCGCCTCGCCTTCCCCGCGGTGACCATCTGCAACCGGAACCTCGTGCGTCCGCGTAGCATGACAAAGCAGGACGTGTTCGGGCTGGGCGCGTGGCTAGGTTTGCTCGGTAGGAACGGAAAGCTTACGGCGGCAGCGCGCGAGGCGCTCGCTCCCCCGCCCACCGGCTCCAGCGCGGCCCCCGCGAGATACGACCCTCCGTGGCTGCCCGTCTCGCGCATGCTGGACTTCGAGCACTTCCTGCCCCCGCCTCGCGACGCGCAGCCCAGCATGCTGCAGGTCTTGGACCGGTTCGGACACCAGCTGGAGGACATGCTGCTGCAGTGCCGCTTCCAGGGCGAGCGGTGCGGCCCTCGCAACTTCAGCACAATCTTCACTCGGTATGGAAAATGCTACACCTTTAACTCGGGTCAGGATGGGCGCCCTCTGCTAGTTACCATGAAGGGAGGCATGGGCAACGGTCTGGAGCTGATGCTGGATATCCAACAAGATGAGTACCTACCAGTGTGGGGAGagacagATGAGACCTCGTTCGAGGCAGGCATCAAAGTGCAGATCCACACTCAGGATGAGCCTCCTTTCATCGATCAGCTGGGATTTGGGGTGGCCCCAGGCTTTCAGACCTTTGTATCCTGCCAGGAGCAGCGGctgACTTACCTGCCTCCCCCGTGGGGTGACTGTCGAGATGCTCCGATGGACTCGGATTTCTTCACCACGTACAGCATCACGGCCTGCCGCATCGACTGTGAGACGCGCTACCTGGTGGAGAACTGCAACTGCCGCATGGTCCACATGCCCGgAGATGCTCCATACTGCACTCCTGAACAGTATAAAGAGTGTGCAGATCCAGCTTTGGATTTCCTGGTGGAGAGAGATAAtgattactgtgtgtgtgagacaccCTGCAATATGACGCGCTATGGCAAAGAGCTGTCCTTCGTCAAGATCCCCAGCAAAGCCTCAGCCAAGTACCTCGCCAAGAAGTTCAACAAGTCTGAGCAGTACATCTCGGATAACATTCTGGTCCTAGACATCTTCTTTGAGGCCTTGAACTACGAGACGATTGAGCAGAAAAAGGCCTACGAGCTGGCAGGATTACTGGGTGATATTGGTGGTCAGATGGGTCTTTTTATTGGAGCCAGTATTCTAACCATTCTGGAACTCTTTGACTATCTTTATGAGgtGATCAAGTATAAGCTGTGTCGCTGCGCAAAGAAGAGCCACAAGCGCAGCAACAACAATGACCGGGGAGCCGTGCTGAGTCTGGACGATGTGAAGCGTCACACTCCCTGTGAAAACCTTCGGACACCCTCCACATATCCTGCCAACATTCTACCTCACCATCCAGGGCAGGGCAATTTTGAGGACTTTACCTGCTGAGCCCATCACAGGAGGAGATGTACAACCAAAGTTGACCGTGCAAAACTCCGCCTTTACCCGGACATCAtgaaatttctttaatttttaaaaaaaaattgatattgTTGTTGctctttgttttgtttcctGCCTGGATGATTCATGGTGGGAAAACTGCCATGTTGATTATCCAAATGGACCACAAAAGTGATGCTATCTACGAACAAAGGATTTCTTGGAAGACTGCCTCAAACGGAACACTCCTTCCTAGCAAAGCCTTCGCATCAAATTCTATGTGACTTATACTTCAAAACTGGCATACAGTGGAAAGGTCTCTAGTGGGTGGAGCCTCCCCGACACCTATCCTGTACATAGCATTGGCTCTACACTGTCTTAAATTGAGTGGCTTAACTAGATTGTTAGAAATAATATAGTGCTTATTTCCACTGTACATGTAGCAGCATTCGTGACCACTGGTGGGCGCCATCCAAACTCATACATGTCTCATAAAAGAATGTAATCTTCCCGAACATCTTGCAACACCAAACCAGTTGGGATTAGCTGTTCAGGGAAGGGAGGAGCCATGGTTGGACCATCCAGGTCTCATCTCGTGACTGCATGCTTGTGCTTGTTCTCCTGTGCATgatttcagttatttattttaagctcATTCTTATTATTGCCAAGTTTGCCTCAATTATATAAAGGTATCGATGGATGACATGGCCCTCTctaattgtgtgtgtggtgtgtctgaGTACATGAATATTTGGGTGCCTTAAACCCTAAAAAGTAAGTGTGACTGGTTGAGAGTGGTATGagagtatgtgagtgtgtgagtgtgtgtgagtatgtgagtgtgtgtgtgtattattccTCAACTAATTAGTTTAATATGTGTATGATGATATATGAATTCCTATGTaagtctgtgtatgtgtgtgtgagagagaggttTACAGCTTACCCAGCAGGCACCAGACATCAGTGCAACATCAGACTTTGAATTTTAGTTGAAAATGAACGTTAGGGAGATTGACGCATCTAAGGCTCCAGTGTTGAACAGACATtgaatttcagttaaaatataaaaatcgaAGCAAAACTCAACATTAGAAAGATTCTAAATTTAGTTGGAAAAAAcaccaaccaaaaaaaaacacaacattgaGTTGACATCAATCTCTTATCATTAGACAGATGTTGAATTTTGGCTAGAGGTCAAAATTCAACATTGAGTTCACATCAAACTGCAGTGCTAGACAAATGTTGAATTTTGGTTTGAGATTTAAAACCtcatatctttaaaaaaaaaacaatataaggTGGACATTAAGCTTCAAGGTTACACAGATGTTGaatttagttcagaaatcaaagtcttgtgtatttaaaaaaaatatatatggttgACATCAAGCTCAAAGGTTAGACAAATCTTGAattttgggttaaaaaaatggtttgaTACCAAAGCCTAATGTGGTACAGACACTAATTTTTGCTTGGAGATCAAAGTCACATTCCCTTAAAACCAGCATTGGATCGACATCAAGCTCCAAGAGATGTTTAGCGAGATGTTTAGTTGGTTGGTTCCTTAACGCCATGTCGTGGCACCAACAACATTAGAATTTCACATTGTATAACATAATGAATTTGAGCAGCTTTTTGTGTATAGCTTACTAAATCTAAACTTATTTTTGTGCTAATTTATGTCAATATGAAATTGGTATGTGATGTTTGGAAGTTGGACGTTTTTGGTTACTTTTGTTCACAAATAACCTACATTTAATCAGATAACAGCATCTTTCAGTGTTGGTGTCTAGCTGGGTATTAACTGAATGGATTATCCTCTCCATTTAAATTATGCGgcatagttattattattttctgtcgCAAATGTCATATCAAAGCACAAGACCACCATTATCTAAAGGGTGATGTAAAAGAAAGGCAGAATACTATCATTACTGAGACTATTACTGTCATGATAATCCGATCTATTATTACTCTATTAATctgatgttttgtttttctactGCAGAAAGAAGAGTATACATATTGCCTGATAGTCCAGTCTTTACAGATAATAGACtgttctatttatttatgatggtataataaatattattgagAATTTTA

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255829 lncRNA upstream 137689 10600268 ~ 10643980 (+) True G188710
TU255837 lncRNA upstream 169577 10609009 ~ 10612092 (+) True G188716
TU255786 lncRNA upstream 291425 10428468 ~ 10490244 (+) True G188672
TU255763 lncRNA upstream 440774 10340655 ~ 10340895 (+) True G188650
TU255756 lncRNA upstream 456464 10324687 ~ 10325205 (+) True G188643
TU256047 lncRNA downstream 45606 11009415 ~ 11010628 (+) True G188906
TU256048 lncRNA downstream 62575 11026384 ~ 11026808 (+) True G188907
TU256050 lncRNA downstream 66720 11030529 ~ 11031324 (+) True G188909
TU256053 lncRNA downstream 90143 11053952 ~ 11054952 (+) True G188912
TU256062 lncRNA downstream 114834 11078643 ~ 11080971 (+) True G188919
XM_022682369.1 mRNA upstream 41994 10738054 ~ 10739675 (+) True LOC103041410
XM_007240551.3 mRNA upstream 648960 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 648960 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 649820 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 675139 10101755 ~ 10106530 (+) True LOC111195371
XM_022682370.1 mRNA downstream 33530 10997339 ~ 11070355 (+) True slc25a26
XM_022682372.1 mRNA downstream 293349 11257158 ~ 11266360 (+) True kbtbd8
XM_022682373.1 mRNA downstream 309628 11273437 ~ 11303246 (+) True LOC103022498
XM_022682857.1 mRNA downstream 595573 11559382 ~ 11562194 (+) True LOC111195454
XM_022682375.1 mRNA downstream 727063 11690872 ~ 12000663 (+) True fam19a1
TU255727 other upstream 478004 10303360 ~ 10303665 (+) True G188624
XR_002651604.1 other upstream 560539 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 566721 10214359 ~ 10214948 (+) True LOC111195374
XR_002651602.1 other upstream 601067 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 675369 10104616 ~ 10106300 (+) False LOC111195371
TU256068 other downstream 125919 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 487570 11451379 ~ 11464480 (+) True G188968
TU256169 other downstream 727077 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other downstream 842899 11806708 ~ 11807095 (+) True LOC111195378
TU256257 other downstream 1269392 12233201 ~ 12236092 (+) False G189073

Expression Profile