RNA id: TU255763


Basic Information

Item Value
RNA id TU255763
length 241
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G188650
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10340655 ~ 10340895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttcagtaacaagtaatctaactaattactctgactgtaactataacgccgttaccatttccaacaccccgttactgcacgttactttagccgattttttttgttttaacttcgctttgccctggttaacccctcctttttccggtgaacttgagcttctggccgctgtgcctgtggtttggcgtggtgaagtgaggcacaattgtgacgatttgcgtgctctaatcaattcagtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255756 lncRNA upstream 15450 10324687 ~ 10325205 (+) True G188643
TU255754 lncRNA upstream 16548 10323721 ~ 10324107 (+) True G188641
TU255752 lncRNA upstream 17027 10323423 ~ 10323628 (+) True G188639
TU255745 lncRNA upstream 29633 10307386 ~ 10311022 (+) True G188632
TU255744 lncRNA upstream 29633 10308319 ~ 10311022 (+) False G188632
TU255786 lncRNA downstream 87573 10428468 ~ 10490244 (+) True G188672
TU255829 lncRNA downstream 259373 10600268 ~ 10643980 (+) True G188710
TU255837 lncRNA downstream 268114 10609009 ~ 10612092 (+) True G188716
TU255886 lncRNA downstream 452084 10792979 ~ 10794567 (+) True G188763
TU255901 lncRNA downstream 492581 10833476 ~ 10887584 (+) True G188769
XM_007240551.3 mRNA upstream 207946 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 207946 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 208806 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 234125 10101755 ~ 10106530 (+) True LOC111195371
XM_007243192.3 mRNA upstream 299514 10023992 ~ 10041141 (+) True dhrs3
XM_022682368.1 mRNA downstream 135044 10475939 ~ 10963809 (+) True LOC103026179
XM_022682367.1 mRNA downstream 135044 10475939 ~ 10963809 (+) False LOC103026179
XM_022682369.1 mRNA downstream 397159 10738054 ~ 10739675 (+) True LOC103041410
XM_022682366.1 mRNA downstream 440774 10781669 ~ 10963809 (+) False LOC103026179
XM_022682370.1 mRNA downstream 656444 10997339 ~ 11070355 (+) True slc25a26
TU255727 other upstream 36990 10303360 ~ 10303665 (+) True G188624
XR_002651604.1 other upstream 119525 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 125707 10214359 ~ 10214948 (+) True LOC111195374
XR_002651602.1 other upstream 160053 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 234355 10104616 ~ 10106300 (+) False LOC111195371
TU255903 other downstream 507176 10848071 ~ 10852736 (+) True G188771
TU256068 other downstream 748833 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 1110484 11451379 ~ 11464480 (+) True G188968
TU256169 other downstream 1349991 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other downstream 1465813 11806708 ~ 11807095 (+) True LOC111195378

Expression Profile