RNA id: TU255837


Basic Information

Item Value
RNA id TU255837
length 503
lncRNA type intronic
GC content 0.48
exon number 2
gene id G188716
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10609009 ~ 10612092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAAAAGTGAGCACTTTGCTgttcctcactctgcctcactctaccttactttacctcactctacatcactccagcttgctgttcctcactctatctcactccaccttactgttcctcactctacctcaccccaccttactgttcctcactttatctcactccaccttactgttcctcactctacctcaccccaccttactgttcctcactctatctcactccaccttactgttcctcactctatctcactccaccttactgttcctcactctacctcactccaccttactgttcctcactctatctcactccaccttactgttcctcactctgtctcactccacctcactgtTCCTCATTCTATCTCACTCCACCTTGCTGtccctcactctatctcactccaccttactgttcctcactctgcctcactccaccttgctgttcctcactctatctcactccaccttactgttcctcactctatctcactccaccttactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255786 lncRNA upstream 118765 10428468 ~ 10490244 (+) True G188672
TU255763 lncRNA upstream 268114 10340655 ~ 10340895 (+) True G188650
TU255756 lncRNA upstream 283804 10324687 ~ 10325205 (+) True G188643
TU255754 lncRNA upstream 284902 10323721 ~ 10324107 (+) True G188641
TU255752 lncRNA upstream 285381 10323423 ~ 10323628 (+) True G188639
TU255886 lncRNA downstream 180887 10792979 ~ 10794567 (+) True G188763
TU255901 lncRNA downstream 221384 10833476 ~ 10887584 (+) True G188769
TU255904 lncRNA downstream 236489 10848581 ~ 10849214 (+) False G188771
TU256047 lncRNA downstream 397323 11009415 ~ 11010628 (+) True G188906
TU256048 lncRNA downstream 414292 11026384 ~ 11026808 (+) True G188907
XM_007240551.3 mRNA upstream 476300 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 476300 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 477160 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 502479 10101755 ~ 10106530 (+) True LOC111195371
XM_007243192.3 mRNA upstream 567868 10023992 ~ 10041141 (+) True dhrs3
XM_022682369.1 mRNA downstream 125962 10738054 ~ 10739675 (+) True LOC103041410
XM_022682366.1 mRNA downstream 169577 10781669 ~ 10963809 (+) False LOC103026179
XM_022682370.1 mRNA downstream 385247 10997339 ~ 11070355 (+) True slc25a26
XM_022682372.1 mRNA downstream 645066 11257158 ~ 11266360 (+) True kbtbd8
XM_022682373.1 mRNA downstream 661345 11273437 ~ 11303246 (+) True LOC103022498
TU255727 other upstream 305344 10303360 ~ 10303665 (+) True G188624
XR_002651604.1 other upstream 387879 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 394061 10214359 ~ 10214948 (+) True LOC111195374
XR_002651602.1 other upstream 428407 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 502709 10104616 ~ 10106300 (+) False LOC111195371
TU255903 other downstream 235979 10848071 ~ 10852736 (+) True G188771
TU256068 other downstream 477636 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 839287 11451379 ~ 11464480 (+) True G188968
TU256169 other downstream 1078794 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other downstream 1194616 11806708 ~ 11807095 (+) True LOC111195378

Expression Profile