G188952


Basic Information

Item Value
gene id G188952
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11269267 ~ 11316483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256103
ttccctCGAATTCCTTGTCTATTCCTTCATGTTTTtccttctgttttctttttgttcacCTCATCTTTTGTTGTTTctcccctttttatttattttacttgtttGGTCCTTCATTTTAGCTTTATCTTCtttctgtgttcttttttctttactttattctttcttattctttttctcttcctgaAAGCCAAGTTCTTCTTTCTGAAAAGAAttgaaagagaggagagaaaggattgagtgagtgagggagagagaggaggccaAGGCTGCGTCCCATCAGGACCGGGCGAGCTCTGTGTGATGAGGCCTGAACAGAGCGAGGACTCTCGGCTGAACCGAATCCGTGCCGTGGTCTGCACAGTCGTGCGGAGCCCCGGCTGCAGCGCGTGGGCGGGACTGTGCGGCGACTGCAGTGCAATAGGTCGCCCTCGGCAGATCCGCTGCAGAGCTCAGTGGCACGGGAACCAGAAACAGACCATTCTCAGGATTTCTTACTGATACCCAGTACTGTATTGACTATGGTTTGATATGTATGTGTAATATACTGTACCATACGTTTGCTGTACTTGcacagtttgattttttttttttgtctttaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256103 True 607 lncRNA 0.44 2 11269267 11316483

Neighbor

gene id symbol gene type direction distance location
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 2907 11257158 ~ 11266360 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 198912 10997339 ~ 11070355 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding upstream 305458 10475939 ~ 10963809 (+)
LOC103041410 asic1b,LOC107569540 coding upstream 529592 10738054 ~ 10739675 (+)
LOC111195375 NA coding upstream 1048137 10220542 ~ 10221130 (+)
LOC111195454 NA coding downstream 242899 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 894262 12210745 ~ 12226480 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 928986 12245469 ~ 12250437 (+)
LOC103039330 LOC108434991 coding downstream 1172279 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 1231167 12547650 ~ 12565023 (+)
G188951 NA non-coding upstream 106 11267052 ~ 11269161 (+)
G188949 NA non-coding upstream 41874 11226336 ~ 11227393 (+)
G188927 NA non-coding upstream 113921 11153605 ~ 11155346 (+)
G188925 NA non-coding upstream 154486 11107440 ~ 11114781 (+)
G188922 lrig1,LOC107699792,LOC107716980,LOC107753782,LOC107557776 non-coding upstream 181051 11087950 ~ 11088216 (+)
G188963 NA non-coding downstream 30391 11346874 ~ 11371649 (+)
G188964 NA non-coding downstream 52927 11369410 ~ 11424335 (+)
G188999 NA non-coding downstream 266982 11583465 ~ 11583879 (+)
LOC111195378 NA non-coding downstream 490225 11806708 ~ 11807095 (+)
G189025 NA non-coding downstream 727660 12044143 ~ 12044418 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 179220 11089728 ~ 11090047 (+)
G188771 NA other upstream 416531 10848071 ~ 10852736 (+)
G188624 NA other upstream 965602 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 1162737 10101755 ~ 10106530 (+)
G188325 NA other upstream 1412272 9854307 ~ 9856995 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 134896 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 374389 11690872 ~ 12000663 (+)
G189073 hmces other downstream 914304 12230787 ~ 12236092 (+)
G189141 NA other downstream 1123120 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 1212556 12529039 ~ 12546452 (+)

Expression


Co-expression Network