G188949


Basic Information

Item Value
gene id G188949
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11226336 ~ 11227393 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256096
CACCCGCTGTTGTCCCCACCTCCTTCCTTGGCATGGTTGGCTCCAGGAATTCCCTCAAGTGTGAGGGATGAACGCGATTACCGGACCGGGGAAGAGGCTCTTAAAATGAGGGAGCTAAACTCCGAGCAGACCGGCTGGAGGCAGCGTTAGCTCATTTTatgaagtgtttattttaattagttaaaaaaattaaaagttctcaacattaataattttgcttgtgtgggtgtgttggtgtgtggtgtgtgtgtgcgcgctctTCTCA
>TU256097
ATCCCAAGATGCATTTCACCAGCTCAGGGTTTCAGCGCTCGGATTTTAAAAAAACTGTCGTACGGAGAAGGGGCTGGGGCagagtttctgtaaaaatgttaattttacactcACTGCTGCGTGTGTTTATCAAAGTAGTTTATTTTAGACAGTTTTAATTTGGCTTCCAGTGTTTTCGCCTGTACCTTATTTAAGGGATGAACGCGATTACCGGACCGGGGAAGAGGCTCTTAAAATGAGGGAGCTAAACTCCGAGCAGACCGGCTGGAGGCAGCGTTAGCTCATTTTatgaagtgtttattttaattagttaaaaaaattaaaagttctcaacattaataattttgcttgtgtgggtgtgttggtgtgtggtgtgtgtgtgcgcgctctTCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256096 False 265 lncRNA 0.47 2 11226336 11227393
TU256097 True 395 lncRNA 0.42 2 11226657 11227393

Neighbor

gene id symbol gene type direction distance location
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 155981 10997339 ~ 11070355 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding upstream 262527 10475939 ~ 10963809 (+)
LOC103041410 asic1b,LOC107569540 coding upstream 486661 10738054 ~ 10739675 (+)
LOC111195375 NA coding upstream 1005206 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 1011388 10214359 ~ 10214948 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 29765 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 46044 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 331989 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 983352 12210745 ~ 12226480 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 1018076 12245469 ~ 12250437 (+)
G188927 NA non-coding upstream 70990 11153605 ~ 11155346 (+)
G188925 NA non-coding upstream 111555 11107440 ~ 11114781 (+)
G188922 lrig1,LOC107699792,LOC107716980,LOC107753782,LOC107557776 non-coding upstream 138120 11087950 ~ 11088216 (+)
G188921 lrig1,LOC107557776,LOC107716980,LOC107600281 non-coding upstream 141144 11084687 ~ 11085192 (+)
G188920 lrig1 non-coding upstream 142628 11083225 ~ 11083708 (+)
G188951 NA non-coding downstream 39659 11267052 ~ 11269161 (+)
G188952 NA non-coding downstream 41874 11269267 ~ 11316483 (+)
G188956 NA non-coding downstream 69212 11296605 ~ 11323032 (+)
G188963 NA non-coding downstream 119481 11346874 ~ 11371649 (+)
G188964 NA non-coding downstream 142017 11369410 ~ 11424335 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 136289 11089728 ~ 11090047 (+)
G188771 NA other upstream 373600 10848071 ~ 10852736 (+)
G188624 NA other upstream 922671 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 1119806 10101755 ~ 10106530 (+)
G188325 NA other upstream 1369341 9854307 ~ 9856995 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 223986 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 463479 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1003394 12230787 ~ 12236092 (+)
G189141 NA other downstream 1212210 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 1301646 12529039 ~ 12546452 (+)

Expression


Co-expression Network